How to Install and Uninstall python3-hisat2 Package on Kali Linux

Last updated: December 25,2024

1. Install "python3-hisat2" package

This guide let you learn how to install python3-hisat2 on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                python3-hisat2
            
                    
    
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2. Uninstall "python3-hisat2" package

Please follow the guidance below to uninstall python3-hisat2 on Kali Linux:


    
        
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                sudo apt remove
            
                        
                python3-hisat2
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-hisat2 package on Kali Linux

Package: python3-hisat2
Source: hisat2
Version: 2.2.1-4
Installed-Size: 80
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: hisat2, python3
Size: 13932
SHA256: 1328e3d46aae3476b059747c2cf4aed62751d2629fda125c72c47e99dea16921
SHA1: 34050318d58b8192537dee5868d435005ec0a920
MD5sum: d05820037d28e745a0bc57687332f3d3
Description: Python scripts accompanying hisat2
HISAT2 is a fast and sensitive alignment program for mapping next-
generation sequencing reads (both DNA and RNA) to a population of human
genomes (as well as against a single reference genome). Based on an
extension of BWT for graphs a graph FM index (GFM) was designed and
implementd. In addition to using one global GFM index that represents a
population of human genomes, HISAT2 uses a large set of small GFM
indexes that collectively cover the whole genome (each index
representing a genomic region of 56 Kbp, with 55,000 indexes needed to
cover the human population). These small indexes (called local indexes),
combined with several alignment strategies, enable rapid and accurate
alignment of sequencing reads. This new indexing scheme is called a
Hierarchical Graph FM index (HGFM).
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This package provides a serires of platform-independent scripts that are
typically expected to be co-installed with the hisat2 binary.
Description-md5:
Homepage: https://daehwankimlab.github.io/hisat2/
Built-Using: simde (= 0.7.2-6)
Section: python
Priority: optional
Filename: pool/main/h/hisat2/python3-hisat2_2.2.1-4_all.deb