How to Install and Uninstall python3-hisat2 Package on Ubuntu 21.10 (Impish Indri)

Last updated: April 30,2024

1. Install "python3-hisat2" package

This is a short guide on how to install python3-hisat2 on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                python3-hisat2
            
                    
    
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2. Uninstall "python3-hisat2" package

Please follow the steps below to uninstall python3-hisat2 on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                python3-hisat2
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-hisat2 package on Ubuntu 21.10 (Impish Indri)

Package: python3-hisat2
Architecture: all
Version: 2.2.1-2
Built-Using: simde (= 0.7.2-3)
Priority: optional
Section: universe/python
Source: hisat2
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 80
Depends: hisat2, python3
Filename: pool/universe/h/hisat2/python3-hisat2_2.2.1-2_all.deb
Size: 12772
MD5sum: 5c43356bdfc6352a201f81eae8bf077f
SHA1: e44f82f7928a4f3f5a0eb865b880192a43418539
SHA256: 34450c27bcc64643e1ecb7aac19f13d084473550eff6fdf992ac10e411dcd333
SHA512: b44ad0a0d359d20e5a06e0be0cb7f1ce93e9a43cca067240b87385ebca81615c14e7184fa7cdce5e37da4c268e34875d11faaafb77694eda9620b79bc2516391
Homepage: https://daehwankimlab.github.io/hisat2/
Description-en: Python scripts accompanying hisat2
HISAT2 is a fast and sensitive alignment program for mapping next-
generation sequencing reads (both DNA and RNA) to a population of human
genomes (as well as against a single reference genome). Based on an
extension of BWT for graphs a graph FM index (GFM) was designed and
implementd. In addition to using one global GFM index that represents a
population of human genomes, HISAT2 uses a large set of small GFM
indexes that collectively cover the whole genome (each index
representing a genomic region of 56 Kbp, with 55,000 indexes needed to
cover the human population). These small indexes (called local indexes),
combined with several alignment strategies, enable rapid and accurate
alignment of sequencing reads. This new indexing scheme is called a
Hierarchical Graph FM index (HGFM).
.
This package provides a serires of platform-independent scripts that are
typically expected to be co-installed with the hisat2 binary.
Description-md5: e4e54f7ce22e56031a8aabf0c8c9a868