How to Install and Uninstall python3-pairtools Package on Kali Linux

Last updated: January 24,2025

1. Install "python3-pairtools" package

This is a short guide on how to install python3-pairtools on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                python3-pairtools
            
                    
    
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2. Uninstall "python3-pairtools" package

Here is a brief guide to show you how to uninstall python3-pairtools on Kali Linux:


    
        
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                sudo apt remove
            
                        
                python3-pairtools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-pairtools package on Kali Linux

Package: python3-pairtools
Source: pairtools
Version: 1.0.3-1
Installed-Size: 1021
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), python3 (<< 3.13), python3 (>= 3.11~), python3-bioframe, python3-click, python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-scipy, python3-yaml, python3:any
Suggests: python3-pairtools-examples (>= 1.0.2)
Size: 231812
SHA256: a04c55ff8ee2e9a54ca1a8d772a3bf27c02540aad1821fb4e12fa62c94e1e903
SHA1: 459fd73c16e67ae54c3c1ca8400398ec0e3dd4bb
MD5sum: 10c84198c83ab356f21ae542e097a9df
Description: Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C
experiment.
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Process pair-end sequence alignments and perform the following operations:
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- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Description-md5:
Homepage: https://github.com/mirnylab/pairtools
Section: python
Priority: optional
Filename: pool/main/p/pairtools/python3-pairtools_1.0.3-1_amd64.deb