How to Install and Uninstall python3-pairtools Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 20,2024

1. Install "python3-pairtools" package

Please follow the guidelines below to install python3-pairtools on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                python3-pairtools
            
                    
    
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2. Uninstall "python3-pairtools" package

Please follow the steps below to uninstall python3-pairtools on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                python3-pairtools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-pairtools package on Ubuntu 21.10 (Impish Indri)

Package: python3-pairtools
Architecture: amd64
Version: 0.3.0-2build2
Priority: optional
Section: universe/python
Source: pairtools
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 438
Depends: libc6 (>= 2.14), cython3, python3 (<< 3.10), python3 (>= 3.9~), python3-click, python3-nose, python3-numpy, python3:any
Filename: pool/universe/p/pairtools/python3-pairtools_0.3.0-2build2_amd64.deb
Size: 123880
MD5sum: e3540c1929576ee964a15a1b9e657438
SHA1: 1a3f2ad7d4e645a12de49c915309c1f8cbb7c2c3
SHA256: 7a3d94753a91fd3e5563f8a50c0c332fc08c3b47114cc50f35f7738a55fd9219
SHA512: d695cfa5fa60f00618eed84bd4fd593dd1f5b120a430d2cfe87b100dd9f2135bcc94a7a7d6c0118d82d0c5fdf753627536cd1dc3f79241c034330d782debb791
Homepage: https://github.com/mirnylab/pairtools
Description-en: Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C
experiment.
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Process pair-end sequence alignments and perform the following operations:
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- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Description-md5: a340132b5467a45fa9b90e04ece3e5c1