How to Install and Uninstall r-bioc-decoupler Package on Kali Linux

Last updated: May 20,2024

1. Install "r-bioc-decoupler" package

Please follow the instructions below to install r-bioc-decoupler on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-decoupler
            
                    
    
    Copied

2. Uninstall "r-bioc-decoupler" package

This guide let you learn how to uninstall r-bioc-decoupler on Kali Linux:


    
        
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                sudo apt remove
            
                        
                r-bioc-decoupler
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the r-bioc-decoupler package on Kali Linux

Package: r-bioc-decoupler
Version: 2.8.0+dfsg-2
Installed-Size: 2225
Maintainer: Debian R Packages Maintainers
Architecture: all
Depends: r-api-4.0, r-api-bioc-3.18, r-cran-broom, r-cran-dplyr, r-cran-magrittr, r-cran-matrix, r-cran-purrr, r-cran-rlang, r-cran-stringr, r-cran-tibble, r-cran-tidyr, r-cran-tidyselect, r-cran-withr
Suggests: r-cran-glmnet (>= 4.1.0), r-bioc-gsva, r-bioc-summarizedexperiment, r-cran-rpart, r-cran-ranger, r-bioc-biocstyle, r-cran-covr, r-cran-knitr, r-cran-pkgdown, r-cran-rmarkdown, r-cran-roxygen2, r-cran-sessioninfo, r-cran-pheatmap, r-cran-testthat, r-cran-seurat, r-cran-ggplot2, r-cran-ggrepel, r-cran-patchwork
Size: 2112332
SHA256: 76f80ecb8bb13810641f357b209cfb62e8421ceac17b0f7d59c8e8c98b855653
SHA1: e1182e4855da63df78541cf04f76fedfef1b77d1
MD5sum: f17f7a68039bc249a95faf0fd433b036
Description: infer biological activities from omics data
Many methods allow one to extract biological activities from omics
data using information from prior knowledge resources, reducing the
dimensionality for increased statistical power and better interpretability.
DecoupleR is a Bioconductor package containing different
statistical methods to extract these signatures within a unified framework.
decoupleR allows the user to flexibly test any method with any resource.
It incorporates methods that take into account the sign and weight of
network interactions. decoupleR can be used with any omic, as long as its
features can be linked to a biological process based on prior knowledge.
For example, in transcriptomics gene sets regulated by a transcription
factor, or in phospho-proteomics phosphosites that are targeted by a kinase.
Description-md5:
Homepage: https://bioconductor.org/packages/decoupleR/
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-decoupler/r-bioc-decoupler_2.8.0+dfsg-2_all.deb