How to Install and Uninstall r-bioc-purecn Package on Kali Linux

Last updated: November 21,2024

1. Install "r-bioc-purecn" package

Please follow the guidance below to install r-bioc-purecn on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-purecn
            
                    
    
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2. Uninstall "r-bioc-purecn" package

Here is a brief guide to show you how to uninstall r-bioc-purecn on Kali Linux:


    
        
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                sudo apt remove
            
                        
                r-bioc-purecn
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the r-bioc-purecn package on Kali Linux

Package: r-bioc-purecn
Version: 2.8.1+dfsg-1
Installed-Size: 6916
Maintainer: Debian R Packages Maintainers
Architecture: all
Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-dnacopy, r-bioc-variantannotation (>= 1.14.1), r-bioc-genomicranges (>= 1.20.3), r-bioc-iranges (>= 2.2.1), r-cran-rcolorbrewer, r-bioc-s4vectors, r-cran-data.table, r-bioc-summarizedexperiment, r-bioc-genomeinfodb, r-bioc-genomicfeatures, r-bioc-rsamtools, r-bioc-biobase, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-rtracklayer, r-cran-ggplot2, r-cran-gridextra, r-cran-futile.logger, r-cran-vgam, r-cran-mclust, r-bioc-rhdf5, r-cran-matrix
Suggests: r-bioc-biocparallel, r-bioc-biocstyle, r-cran-pscbs, r-cran-r.utils, r-cran-covr, r-cran-knitr, r-cran-optparse, r-bioc-org.hs.eg.db, r-cran-jsonlite, r-cran-markdown, r-cran-rmarkdown, r-cran-testthat
Size: 6014792
SHA256: a9b3c22616d7d02647cea2819e03e91b8b661c0630be685f414889594a60ec24
SHA1: 276db48bf380ab0473676e205c2230d5ac14727d
MD5sum: 6b7c7e0737b43e56d12dff8140d3cb1e
Description: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of
heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by
somatic status and clonality. PureCN is designed for targeted short read
sequencing data, integrates well with standard somatic variant detection
and copy number pipelines, and has support for tumor samples without
matching normal samples.
Description-md5:
Homepage: https://bioconductor.org/packages/PureCN/
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-purecn/r-bioc-purecn_2.8.1+dfsg-1_all.deb