How to Install and Uninstall r-bioc-purecn Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 19,2024

1. Install "r-bioc-purecn" package

Please follow the step by step instructions below to install r-bioc-purecn on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-purecn
            
                    
    
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2. Uninstall "r-bioc-purecn" package

This guide let you learn how to uninstall r-bioc-purecn on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                r-bioc-purecn
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-purecn package on Ubuntu 21.10 (Impish Indri)

Package: r-bioc-purecn
Architecture: all
Version: 1.20.0+dfsg-3
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 8174
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-bioc-dnacopy, r-bioc-variantannotation (>= 1.14.1), r-bioc-genomicranges (>= 1.20.3), r-bioc-iranges (>= 2.2.1), r-cran-rcolorbrewer, r-bioc-s4vectors, r-cran-data.table, r-bioc-summarizedexperiment, r-bioc-genomeinfodb, r-bioc-genomicfeatures, r-bioc-rsamtools, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-rtracklayer, r-cran-ggplot2, r-cran-gridextra, r-cran-futile.logger, r-cran-vgam, r-bioc-rhdf5, r-cran-matrix
Recommends: r-cran-testthat
Suggests: r-bioc-biocparallel, r-bioc-biocstyle, r-cran-pscbs, r-cran-covr, r-cran-knitr, r-cran-optparse, r-bioc-org.hs.eg.db, r-cran-jsonlite, r-cran-rmarkdown
Filename: pool/universe/r/r-bioc-purecn/r-bioc-purecn_1.20.0+dfsg-3_all.deb
Size: 5310008
MD5sum: 8994b26094514573410318ab8a3fae3e
SHA1: 42999f2b28825f4c7ad17bef5ee892cafc38ff11
SHA256: fc5396021a9d293512145bffe3f40fd1664e6189025ddf592449fa19b30980a1
SHA512: 5c9923467cea9a3af3e822519185c661469f2941cdb526e5c6de0f21cae93ab559db555e7a9628db01e5bcde9558bf97497dcaa06bd3b1fb621a044f093a573e
Homepage: https://bioconductor.org/packages/PureCN/
Description-en: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of
heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by
somatic status and clonality. PureCN is designed for targeted short read
sequencing data, integrates well with standard somatic variant detection
and copy number pipelines, and has support for tumor samples without
matching normal samples.
Description-md5: 8e04360f54e8e8be0dd9281fc8ab5c7b