How to Install and Uninstall r-cran-spp Package on Kali Linux

Last updated: October 06,2024

1. Install "r-cran-spp" package

This guide covers the steps necessary to install r-cran-spp on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-cran-spp
            
                    
    
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2. Uninstall "r-cran-spp" package

Please follow the guidelines below to uninstall r-cran-spp on Kali Linux:


    
        
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                sudo apt remove
            
                        
                r-cran-spp
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-cran-spp package on Kali Linux

Package: r-cran-spp
Version: 1.16.0-2
Installed-Size: 453
Maintainer: Debian R Packages Maintainers
Architecture: amd64
Replaces: r-other-hms-dbmi-spp
Provides: r-other-hms-dbmi-spp
Depends: r-base-core (>= 4.0.2-1), r-api-4.0, r-cran-rcpp, r-bioc-rsamtools, r-cran-catools, r-cran-bh (>= 1.66), libbz2-1.0, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Conflicts: r-other-hms-dbmi-spp
Size: 322908
SHA256: 2f6063bef2567ff50c9fd1ca923554bb16e9e410318fe43dde1f7c1d297cda34
SHA1: 8ddedbd72eb0d39f3aae56610f025af711da7acc
MD5sum: 76001c0bd1bfa52ac5c2ebae8f84e7d2
Description: GNU R ChIP-seq processing pipeline
R package for anlaysis of ChIP-seq and other functional sequencing data
* Assess overall DNA-binding signals in the data and select appropriate
quality of tag alignment.
* Discard or restrict positions with abnormally high number of tags.
* Calculate genome-wide profiles of smoothed tag density and save them
in WIG files for viewing in other browsers.
* Calculate genome-wide profiles providing conservative statistical
estimates of fold enrichment ratios along the genome. These can be
exported for browser viewing, or thresholded to determine regions of
significant enrichment/depletion.
* Determine statistically significant point binding positions
* Assess whether the set of point binding positions detected at a
current sequencing depth meets saturation criteria, and if does not,
estimate what sequencing depth would be required to do so.
Description-md5:
Homepage: https://cran.r-project.org/package=spp
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-cran-spp/r-cran-spp_1.16.0-2_amd64.deb