How to Install and Uninstall r-cran-spp Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 29,2024

1. Install "r-cran-spp" package

Please follow the guidance below to install r-cran-spp on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-cran-spp
            
                    
    
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2. Uninstall "r-cran-spp" package

Learn how to uninstall r-cran-spp on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                r-cran-spp
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-cran-spp package on Ubuntu 20.10 (Groovy Gorilla)

Package: r-cran-spp
Architecture: amd64
Version: 1.16.0-1build2
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 460
Provides: r-other-hms-dbmi-spp
Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0, r-cran-rcpp, r-bioc-rsamtools, r-cran-catools, r-cran-bh (>= 1.66), libbz2-1.0, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Conflicts: r-other-hms-dbmi-spp
Replaces: r-other-hms-dbmi-spp
Filename: pool/universe/r/r-cran-spp/r-cran-spp_1.16.0-1build2_amd64.deb
Size: 324504
MD5sum: 69d2cae22709754a767afead9e8e6f32
SHA1: f9f6240dc8c858a7137265aa370bc62e884e8037
SHA256: 6cde4fb0f745e339ba7179657681c1df10760f07ee71038ca84e2a05b32fdc4d
SHA512: 2a6c2a45b141754ffa9ef31b7a2d22558bf70171b104f9856a4644e36cdfc8deb46b3ad8ee45312fab98b9e9644d8719ba0ea550470f611a5e875d491a3ed71b
Homepage: https://cran.r-project.org/package=spp
Description-en: GNU R ChIP-seq processing pipeline
R package for anlaysis of ChIP-seq and other functional sequencing data
* Assess overall DNA-binding signals in the data and select appropriate
quality of tag alignment.
* Discard or restrict positions with abnormally high number of tags.
* Calculate genome-wide profiles of smoothed tag density and save them
in WIG files for viewing in other browsers.
* Calculate genome-wide profiles providing conservative statistical
estimates of fold enrichment ratios along the genome. These can be
exported for browser viewing, or thresholded to determine regions of
significant enrichment/depletion.
* Determine statistically significant point binding positions
* Assess whether the set of point binding positions detected at a
current sequencing depth meets saturation criteria, and if does not,
estimate what sequencing depth would be required to do so.
Description-md5: 6789c1c77359b6f9a435abe80ec2b9ee