How to Install and Uninstall ruby-crb-blast Package on Kali Linux

Last updated: December 27,2024

1. Install "ruby-crb-blast" package

Please follow the instructions below to install ruby-crb-blast on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                ruby-crb-blast
            
                    
    
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2. Uninstall "ruby-crb-blast" package

Please follow the step by step instructions below to uninstall ruby-crb-blast on Kali Linux:


    
        
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                sudo apt remove
            
                        
                ruby-crb-blast
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the ruby-crb-blast package on Kali Linux

Package: ruby-crb-blast
Version: 0.6.9-5
Installed-Size: 52
Maintainer: Debian Ruby Team
Architecture: all
Depends: ncbi-blast+, ruby, ruby-trollop (>= 2.0), ruby-bio (>= 2.0), ruby-fixwhich (>= 1.0.2), ruby-threach (>= 0.2.0)
Size: 12108
SHA256: 76c83dbcd59fe7144aec6d69d73d1ffd2dd54ba188ebf357b7f66637a05d25f7
SHA1: b53bf7332aa677d6d89b07170de0cd99c0d9da4d
MD5sum: 4667cab5c159a646ef7a153645d6e9e3
Description: Run conditional reciprocal best blast
CRB-BLAST is a novel method for finding orthologs between one set of sequences
and another. This is particularly useful in genome and transcriptome
annotation.
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CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by
performing BLAST alignments of query->target and target->query. Reciprocal
best BLAST hits are those where the best match for any given query sequence in
the query->target alignment is also the best hit of the match in the reverse
(target->query) alignment.
.
Reciprocal best BLAST is a very conservative way to assign orthologs. The main
innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to
each pairwise alignment by taking into account the overall relatedness of the
two datasets being compared. This is done by fitting a function to the
distribution of alignment e-values over sequence lengths. The function
provides the e-value cutoff for a sequence of given length.
Description-md5:
Homepage: https://github.com/cboursnell/crb-blast
Section: ruby
Priority: optional
Filename: pool/main/r/ruby-crb-blast/ruby-crb-blast_0.6.9-5_all.deb