How to Install and Uninstall ruby-crb-blast Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 23,2024

1. Install "ruby-crb-blast" package

Please follow the guidance below to install ruby-crb-blast on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ruby-crb-blast
            
                    
    
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2. Uninstall "ruby-crb-blast" package

This guide covers the steps necessary to uninstall ruby-crb-blast on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                ruby-crb-blast
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ruby-crb-blast package on Ubuntu 20.10 (Groovy Gorilla)

Package: ruby-crb-blast
Architecture: all
Version: 0.6.9-4
Priority: optional
Section: universe/ruby
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Ruby Extras Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 52
Depends: ncbi-blast+, ruby | ruby-interpreter, ruby-bio, ruby-fixwhich, ruby-threach, ruby-trollop
Filename: pool/universe/r/ruby-crb-blast/ruby-crb-blast_0.6.9-4_all.deb
Size: 12064
MD5sum: abb1168a07b9222e990cfdcd08b1da0b
SHA1: ca1c9ff8904165ecb802c4973af658f9ae0cec83
SHA256: ddca11a8eb6196c751dd005b735b989d4aac68fead4b1f487579b6415b0d7795
SHA512: 286ac782dbe9cadf5b5da6c14cf5f7d0067a36d96a59d3e589e13846bca582979cb096e962d300c7515aa0fd5aa6b694ecea3e9555d813022eb63196e3cdba55
Homepage: https://github.com/cboursnell/crb-blast
Description-en: Run conditional reciprocal best blast
CRB-BLAST is a novel method for finding orthologs between one set of sequences
and another. This is particularly useful in genome and transcriptome
annotation.
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CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by
performing BLAST alignments of query->target and target->query. Reciprocal
best BLAST hits are those where the best match for any given query sequence in
the query->target alignment is also the best hit of the match in the reverse
(target->query) alignment.
.
Reciprocal best BLAST is a very conservative way to assign orthologs. The main
innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to
each pairwise alignment by taking into account the overall relatedness of the
two datasets being compared. This is done by fitting a function to the
distribution of alignment e-values over sequence lengths. The function
provides the e-value cutoff for a sequence of given length.
Description-md5: b8694674f553b0ae33fd1ec67da3861a
Ruby-Versions: all