How to Install and Uninstall soapsnp Package on Kali Linux

Last updated: May 05,2024

1. Install "soapsnp" package

In this section, we are going to explain the necessary steps to install soapsnp on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                soapsnp
            
                    
    
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2. Uninstall "soapsnp" package

Here is a brief guide to show you how to uninstall soapsnp on Kali Linux:


    
        
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                sudo apt remove
            
                        
                soapsnp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the soapsnp package on Kali Linux

Package: soapsnp
Version: 1.03-5
Installed-Size: 118
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Suggests: genomics.cn-soapsnp
Size: 49808
SHA256: 837fd3652403b009eaaaee7488ecbf803e52cab4da98d717cdd18fa5fdc57469
SHA1: c7a21a5cef9e2af83eb1bb48a46ca1895415b7e4
MD5sum: 8b91af82f722a0862fd298cc3bdf3122
Description: resequencing utility that can assemble consensus sequence of genomes
For getting ideas on the cause of diseases or their response to
therapy, and for understanding either for a particular patient,
doctors around the globe are starting to look at the genes or the
whole genome and how that sequence is different from a healthy /
well responding individual.
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SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis
Package). The program is a resequencing utility. It assembles the
consensus sequence for the genome of a newly sequenced individual based
on the alignment of the raw sequencing reads on a known reference. SNPs
can then be identified on the consensus sequence through the comparison
with the reference.
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SOAPsnp uses a method based on Bayes' theorem (the reverse probability
model) to call consensus genotype by carefully considering the data
quality, alignment, and recurring experimental errors. All these kinds
of information was integrated into a single quality score for each base
in PHRED scale to measure the accuracy of consensus calling. Currently,
it supports the alignment format of SOAPaligner (soap2).
Description-md5:
Homepage: http://soap.genomics.org.cn/soapsnp.html
Section: science
Priority: optional
Filename: pool/main/s/soapsnp/soapsnp_1.03-5_amd64.deb