How to Install and Uninstall soapsnp Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "soapsnp" package

Please follow the steps below to install soapsnp on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                soapsnp
            
                    
    
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2. Uninstall "soapsnp" package

Please follow the guidelines below to uninstall soapsnp on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                soapsnp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the soapsnp package on Ubuntu 20.10 (Groovy Gorilla)

Package: soapsnp
Architecture: amd64
Version: 1.03-3build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 110
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Suggests: genomics.cn-soapsnp
Filename: pool/universe/s/soapsnp/soapsnp_1.03-3build1_amd64.deb
Size: 46308
MD5sum: 10fbd163705952697b336a666d9e4877
SHA1: 4bc20f13afb2a52fceee477b0410df7da4d6d103
SHA256: d1d41a3b3fbee1219f375f44d1a83d2167cb8f2e18a46d6a2bd60072f09f7a75
SHA512: cb9b361b66689125dcc399d9580e81a2aa2bfa6fe3c83fa50ac40f20d458f14a22f8290f196dc3de99417e4d93d0a478f1c7f10fb006d5679edc65e8f1ed3b2c
Homepage: http://soap.genomics.org.cn/soapsnp.html
Description-en: resequencing utility that can assemble consensus sequence of genomes
For getting ideas on the cause of diseases or their response to
therapy, and for understanding either for a particular patient,
doctors around the globe are starting to look at the genes or the
whole genome and how that sequence is different from a healthy /
well responding individual.
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SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis
Package). The program is a resequencing utility. It assembles the
consensus sequence for the genome of a newly sequenced individual based
on the alignment of the raw sequencing reads on a known reference. SNPs
can then be identified on the consensus sequence through the comparison
with the reference.
.
SOAPsnp uses a method based on Bayes' theorem (the reverse probability
model) to call consensus genotype by carefully considering the data
quality, alignment, and recurring experimental errors. All these kinds
of information was integrated into a single quality score for each base
in PHRED scale to measure the accuracy of consensus calling. Currently,
it supports the alignment format of SOAPaligner (soap2).
Description-md5: a9ca39a38ef5b5cbc92e0da83695f280