How to Install and Uninstall yaha Package on Kali Linux

Last updated: May 17,2024

1. Install "yaha" package

This guide covers the steps necessary to install yaha on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                yaha
            
                    
    
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2. Uninstall "yaha" package

This guide let you learn how to uninstall yaha on Kali Linux:


    
        
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                sudo apt remove
            
                        
                yaha
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the yaha package on Kali Linux

Package: yaha
Version: 0.1.83-3
Installed-Size: 109
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.4)
Size: 44008
SHA256: e1ba4dbecff8f1bd7a15be45def6d33ba8ea72c83cf5ef61a505f123ffd83562
SHA1: d4f759ad823b582408f9c2aefd23e0db05cc48ee
MD5sum: be8ec9f817eeae35c41af3f209865117
Description: find split-read mappings on single-end queries
yaha is an open source, flexible, sensitive and accurate DNA aligner
designed for single-end reads. It supports three major modes of
operation:
* The default “Optimal Query Coverage” (-OQC) mode reports the
best set of alignments that cover the length of each query.
* Using “Filter By Similarity” (-FBS), along with the best set of
alignments, yaha will also output alignments that are highly similar
to an alignment in the best set.
* Finally, yaha can output all the alignments found for each query.
The -OQC and -FBS modes are specifically tuned to form split read
mappings that can be used to accurately identify structural variation
events (deletions, duplications, insertions or inversions) between the
subject query and the reference genome.
Description-md5:
Homepage: https://github.com/GregoryFaust/yaha
Section: science
Priority: optional
Filename: pool/main/y/yaha/yaha_0.1.83-3_amd64.deb