How to Install and Uninstall yaha Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 20,2024

1. Install "yaha" package

In this section, we are going to explain the necessary steps to install yaha on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                yaha
            
                    
    
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2. Uninstall "yaha" package

This tutorial shows how to uninstall yaha on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                yaha
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the yaha package on Ubuntu 21.10 (Impish Indri)

Package: yaha
Architecture: amd64
Version: 0.1.83-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 113
Depends: libc6 (>= 2.4)
Filename: pool/universe/y/yaha/yaha_0.1.83-2_amd64.deb
Size: 44060
MD5sum: 60b0e55666c53d1f68631f2a32cb7b7d
SHA1: 68cd8e442b7c86b3f9a50b9243ec96e29a419e0f
SHA256: 6fcf019a04b95efe3058b702b14bbebb1cb9efc46681fffbd609200acf601088
SHA512: aa4022d5f88b62382fd72e87ceb374af7887c7868126cd904a86baaebc3762706d919ffba120aeb7bed03d84bb879b2f7ff9bcf2694a69e17bef5b723c6b61cb
Homepage: https://github.com/GregoryFaust/yaha
Description-en: find split-read mappings on single-end queries
yaha is an open source, flexible, sensitive and accurate DNA aligner
designed for single-end reads. It supports three major modes of
operation:
* The default “Optimal Query Coverage” (-OQC) mode reports the
best set of alignments that cover the length of each query.
* Using “Filter By Similarity” (-FBS), along with the best set of
alignments, yaha will also output alignments that are highly similar
to an alignment in the best set.
* Finally, yaha can output all the alignments found for each query.
The -OQC and -FBS modes are specifically tuned to form split read
mappings that can be used to accurately identify structural variation
events (deletions, duplications, insertions or inversions) between the
subject query and the reference genome.
Description-md5: 93435da37e2ea580b6a7d1c2a5ccbafa