How to Install and Uninstall med-bio Package on Linux Mint 20.3 (Una)

Last updated: May 13,2024

1. Install "med-bio" package

In this section, we are going to explain the necessary steps to install med-bio on Linux Mint 20.3 (Una)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                med-bio
            
                    
    
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2. Uninstall "med-bio" package

This tutorial shows how to uninstall med-bio on Linux Mint 20.3 (Una):


    
        
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                sudo apt remove
            
                        
                med-bio
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the med-bio package on Linux Mint 20.3 (Una)

Package: med-bio
Architecture: all
Version: 3.5.1
Priority: optional
Section: universe/misc
Source: debian-med
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 52
Depends: med-config (= 3.5.1), med-tasks (= 3.5.1)
Recommends: abacas, abyss, acedb-other, adapterremoval, adun-core, aegean, aevol, alien-hunter, alter-sequence-alignment, altree, amap-align, ampliconnoise, andi, anfo, aragorn, arden, ariba, art-nextgen-simulation-tools, artemis, artfastqgenerator, assemblytics, atac, atropos, augustus, autodock, autodock-vina, autogrid, axe-demultiplexer, baitfisher, bali-phy, ballview, bamtools, bandage, barrnap, bcbio, bcftools, beads, beagle, beast-mcmc, beast2-mcmc, bedops, bedtools, belvu, berkeley-express, bio-eagle, bio-rainbow, bio-tradis, biosyntax, bitseq, blasr, blixem, bolt-lmm, bowtie, bowtie2, boxshade, bppphyview, bppsuite, brig, bwa, canu, cassiopee, cct, cd-hit, cdbfasta, centrifuge, cgview, changeo, chimeraslayer, chromhmm, chromimpute, circlator, circos, clearcut, clonalframe, clonalframeml, clonalorigin, clustalo, clustalw, clustalx, cnvkit, codonw, concavity, conservation-code, crac, csb, cutadapt, daligner, datamash, dawg, dazzdb, deepnano, delly, dialign, dialign-tx, diamond-aligner, dindel, disulfinder, dnaclust, dotter, dssp, dwgsim, e-mem, ea-utils, ecopcr, edtsurf, eigensoft, elph, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, emmax, estscan, examl, exonerate, fastahack, fastaq, fastdnaml, fastlink, fastml, fastp, fastqc, fastqtl, fasttree, ffindex, figtree, fitgcp, flexbar, fml-asm, freebayes, freecontact, fsa, fsm-lite, gamgi, garli, garlic, gasic, gatb-core, gdpc, gemma, genometester, genometools, gentle, gff2aplot, gff2ps, gffread, ghemical, ghmm, glam2, grabix, graphlan, grinder, gromacs, gubbins, gwama, harvest-tools, hhsuite, hilive, hinge, hisat2, hmmer, hmmer2, hyphy-mpi | hyphy-pt, idba, igor, indelible, infernal, ipig, iqtree, iva, jaligner, jellyfish, jellyfish1, jmodeltest, jmol, kalign, kallisto, khmer, king-probe, kissplice, kma, kmc, kmer, kmerresistance, kraken, kraken2, lagan, lamarc, lambda-align, lambda-align2, last-align, leaff, lefse, librg-utils-perl, libvcflib-tools, logol, loki, ltrsift, lucy, macs, macsyfinder, maffilter, mafft, mapdamage, mapsembler2, maq, maqview, mash, mauve-aligner, melting, meryl, metaphlan2, metastudent, mhap, microbegps, microbiomeutil, minia, miniasm, minimac4, minimap, minimap2, mipe, mira-assembler, mlv-smile, mmseqs2, mothur, mptp, mrbayes, mummer, murasaki | murasaki-mpi, muscle, mustang, nanook, nanopolish, nast-ier, ncbi-blast+, ncbi-blast+-legacy, ncbi-entrez-direct, ncbi-epcr, ncbi-seg, ncbi-tools-bin, ncbi-tools-x11, ncl-tools, ncoils, neobio, njplot, norsp, obitools, openms, optimir, pal2nal, paleomix, paml, paraclu, parsinsert, parsnp, patman, pbdagcon, pbsim, perlprimer, perm, pftools, phast, phipack, phybin, phylip, phyml, physamp, phyutility, phyx, picard-tools, piler, pilercr, pilon, pirs, placnet, plasmidomics, plasmidseeker, plast, plink, plink1.9, plip, poa, populations, porechop, poretools, prank, predictnls, prime-phylo, primer3, proalign, probabel, probalign, probcons, proda, prodigal, profphd-utils, proftmb, progressivemauve, proteinortho, prottest, pscan-chip, pscan-tfbs, psortb, pycorrfit, pymol, pynast, pyscanfcs, python3-biomaj3-daemon, python3-geneimpacts, python3-gffutils, python3-presto, python3-pybedtools, python3-pybel, python3-sqt, python3-treetime, pyvcf, qcumber, qiime, qtltools, quorum, qutemol, r-bioc-annotate, r-bioc-biostrings, r-bioc-bitseq, r-bioc-cner, r-bioc-cummerbund, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ebseq, r-bioc-genefilter, r-bioc-geneplotter, r-bioc-gviz, r-bioc-hilbertvis, r-bioc-impute, r-bioc-limma, r-bioc-mergeomics, r-bioc-multiassayexperiment, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-rtracklayer, r-bioc-tfbstools, r-cran-adegenet, r-cran-adephylo, r-cran-alakazam, r-cran-ape, r-cran-bio3d, r-cran-distory, r-cran-genabel, r-cran-kaos, r-cran-metamix, r-cran-phangorn, r-cran-phytools, r-cran-pscbs, r-cran-qtl, r-cran-rotl, r-cran-samr, r-cran-sdmtools, r-cran-seqinr, r-cran-shazam, r-cran-tcr, r-cran-tigger, r-cran-treescape, r-cran-vegan, r-cran-webgestaltr, r-other-hms-dbmi-spp, r-other-mott-happy.hbrem, racon, radiant, rambo-k, rampler, rapmap, rasmol, raster3d, rate4site, raxml, ray, rdp-alignment, rdp-classifier, rdp-readseq, readseq, reapr, relion-bin | relion-bin+mpi, relion-bin+gui | relion-bin+mpi+gui, repeatmasker-recon, reprof, rna-star, rnahybrid, roary, roguenarok, rsem, rtax, runcircos-gui, saint, salmon, samblaster, samtools, scoary, scrm, scythe, seaview, seer, segemehl, seqan-apps, seqmagick, seqprep, seqsero, seqtk, sga, sibsim4, sickle, sigma-align, sim4, sim4db, skesa, smalt, smithwaterman, snap, snap-aligner, sniffles, snp-sites, snpomatic, soapaligner, soapdenovo, soapdenovo2, soapsnp, sortmerna, spaced, spades, spoa, sprai, spread-phy, squizz, sra-toolkit, srst2, ssake, sspace, ssw-align, stacks, staden, staden-io-lib-utils, subread, suitename, sumaclust, sumatra, sumtrees, surankco, swarm, sweed, t-coffee, tabix, tantan, theseus, tigr-glimmer, tm-align, toil, topp, toppred, trace2dbest, tracetuner, transdecoder, transrate-tools, transtermhp, tree-puzzle | tree-ppuzzle, treeview, treeviewx, trimmomatic, trinityrnaseq, tvc, uc-echo, umis, unicycler, varna, vcftools, velvet | velvet-long, velvetoptimiser, viewmol, virulencefinder, vsearch, wham-align, wigeon, wise, yaha, zalign
Suggests: acacia, adun.app, amos-assembler, amoscmp, annovar, apollo, arachne, arb, asap, autodocktools, avogadro, axparafit, axpcoords, bagpipe, bambus, bax2bam, biceps, big-blast, bigsdb, biobambam2, bismark, blat, blimps-utils, blobology, braker, btk-core, cactus, caftools, cain, card-rgi, ccs, cdna-db, cellprofiler, cinema, cluster3, cmap, compclust, condetri, contrafold, contralign, coot, copycat, crossbow, crux-toolkit, cufflinks, cytoscape, dascrubber, dazzle, deepbinner, dendroscope, discosnp, e-hive, ecell, embassy-phylip, emboss-explorer, emperor, ensembl, estferret, euler-sr, euler2, exabayes, exalt, excavator, falcon, fasta3, ffp, figaro, filtlong, forester, forge, galaxy, gassst, gatk, gbrowse, gbrowse-syn, genemark, genesplicer, genetrack, genezilla, genographer, getdata, giira, glimmerhmm, gmap, gmv, gramalign, haploview, hawkeye, htqc, idefix, igdiscover, igv, inspect, jalview, jbrowse, jigsaw, kaptive, kempbasu, kineticstools, kleborate, lofreq, mach-haplotyper, mage2tab, maker2, malt, manta, martj, maude, maxd, meme, mesquite, metabit, metarep, metastudent-data, metastudent-data-2, metastudent-data-3, mgltools-cadd, mgltools-vision, migrate, mindthegap, minimus, mirbase, mirtop, modeller, molekel, mosaik-aligner, mosdepth, mpsqed, mrs, msatfinder, msxpertsuite, mugsy, multiqc, mummergpu, mview, nanocall, ncbi-igblast, nextsv, ngila, ngsqctoolkit, norsnet, nw-align, oases, obo-edit, oligoarrayaux, omegamap, oncofuse, operondb, optitype, paipline, partigene, partitionfinder, patristic, pbalign, pbbarcode, pbgenomicconsensus, pbh5tools, pbhoney, pbjelly, pbsuite, pcma, pdb2pqr, pfaat, phagefinder, phpphylotree, phylographer, phylophlan, phyloviz-core, phylowin, pigx-rnaseq, pigx-scrnaseq, pipasic, pizzly, plato, predictprotein, profbval, profisis, profit, profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun, profphd, profphd-net, prokka, prot4est, psipred, pssh2, pufferfish, purple, pyrophosphate-tools, python3-alignlib, python3-cogent, python3-deeptools, python3-deeptoolsintervals, python3-loompy, python3-orange, python3-py2bit, python3-pyflow, python3-reaper, qtlcart, qualimap, quast, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-ensembldb, r-bioc-geoquery, r-bioc-go.db, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-qusage, r-bioc-savr, r-bioc-tximport, r-cran-boolnet, r-cran-corrplot, r-cran-drinsight, r-cran-dynamictreecut, r-cran-fitdistrplus, r-cran-forecast, r-cran-gprofiler, r-cran-pheatmap, r-cran-qqman, r-cran-rentrez, r-cran-sctransform, r-cran-seurat, r-cran-tsne, r-cran-wgcna, r-other-apmswapp, raccoon, ragout, raxml-ng, rbs-finder, repeatmasker, resfinder, rmblast, roadtrips, roche454ace2caf, rose, rsat, sailfish, sambamba, sap, science-workflow, seq-gen, seq-seq-pan, seqcluster, sequenceconverter.app, sibelia, sift, sina, sistr, situs, skewer, smalr, smrtanalysis, snpeff, solvate, sourmash, spaln, sparta, splitstree, ssaha, strap, strap-base, strelka, stringtie, tab2mage, tacg, taverna, taxinspector, tetra, tide, tigr-glimmer-mg, tn-seqexplorer, tnseq-transit, treebuilder3d, treetime, trim-galore, tripal, trnascan-se, twain, ugene, umap, unanimity, unc-fish, uniprime, varmatch, varscan, vcfanno, vdjtools, vg, vienna-rna, vmd, x-tandem-pipeline, zodiac-zeden
Filename: pool/universe/d/debian-med/med-bio_3.5.1_all.deb
Size: 7772
MD5sum: 4c187879a79e23f334471b07fcf32baa
SHA1: f652ef8cbd75c09be2358fe69d9657f360609843
SHA256: f8a02f37289bc0790751e724717dd21730de1745bcd257a51ea8151f01e95617
Description: Debian Med bioinformatics packages
Description-md5: 472a50c6504872b123b928f5c13e0f5e