How to Install and Uninstall tophat Package on Ubuntu 18.04 LTS (Bionic Beaver)

Last updated: April 27,2024

1. Install "tophat" package

Please follow the guidelines below to install tophat on Ubuntu 18.04 LTS (Bionic Beaver)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                tophat
            
                    
    
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2. Uninstall "tophat" package

Please follow the guidance below to uninstall tophat on Ubuntu 18.04 LTS (Bionic Beaver):


    
        
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                sudo apt remove
            
                        
                tophat
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the tophat package on Ubuntu 18.04 LTS (Bionic Beaver)

Package: tophat
Architecture: amd64
Version: 2.1.1+dfsg1-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 3807
Depends: libboost-system1.65.1, libboost-thread1.65.1, libc6 (>= 2.15), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), python, bowtie2 | bowtie, samtools (>= 1.5)
Suggests: cufflinks
Filename: pool/universe/t/tophat/tophat_2.1.1+dfsg1-1_amd64.deb
Size: 675684
MD5sum: 539001bdea769f9916aab531a1f25943
SHA1: b3160beb1dde8b0429f79b01cd8a8b2b90b76135
SHA256: bc8110aa5068c0c3c45736ca0d26ea384f31572edf2057c8dbb54eefc51526c4
Homepage: http://ccb.jhu.edu/software/tophat
Description: fast splice junction mapper for RNA-Seq reads
Description-md5: 9cc01583a12c23af71b350c1cd8d209b