How to Install and Uninstall ampliconnoise Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 24,2024

1. Install "ampliconnoise" package

Learn how to install ampliconnoise on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                ampliconnoise
            
                    
    
    Copied

2. Uninstall "ampliconnoise" package

Please follow the guidance below to uninstall ampliconnoise on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                ampliconnoise
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the ampliconnoise package on Ubuntu 20.10 (Groovy Gorilla)

Package: ampliconnoise
Architecture: amd64
Version: 1.29-9
Priority: extra
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2036
Depends: libc6 (>= 2.29), libgsl25 (>= 2.6), libopenmpi3 (>= 4.0.3), mafft
Recommends: openmpi-bin
Filename: pool/universe/a/ampliconnoise/ampliconnoise_1.29-9_amd64.deb
Size: 1105684
MD5sum: 15304b92442977fa803f6979c30c3021
SHA1: d50dcee2e4ca1a5222f60c26f5e6c22b7af99941
SHA256: cc818f79ebc09349bcfd6e925c541889c2faf1ac4cbf8e12d6647b0e653b6c3d
SHA512: 90e77259c9520537083e0ae1487e1a1b06ad58add8bf42daa537a1efa0c096989623d54806b4937212b2de35c5d014ec34891f614a993307860704e68ffec27b
Homepage: https://github.com/lanzen/ampliconnoise
Description-en: removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput
sequence data. It consists of three main parts:
.
Pyronoise - does flowgram-based clustering to spot misreads
SeqNoise - removes PCR point mutations
Perseus - removes PCR chimeras without the need for a set of reference
sequences
.
Previously there was a standalone "Pyronoise" by the same authors and
this package includes an updated version. There is also a "Denoiser"
in Qiime which is related but distinct.
Description-md5: cd8d15fcdec00d4fc4f08c519dbff884