How to Install and Uninstall art-nextgen-simulation-tools Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: April 28,2024

1. Install "art-nextgen-simulation-tools" package

Please follow the steps below to install art-nextgen-simulation-tools on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                art-nextgen-simulation-tools
            
                    
    
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2. Uninstall "art-nextgen-simulation-tools" package

Please follow the instructions below to uninstall art-nextgen-simulation-tools on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                art-nextgen-simulation-tools
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the art-nextgen-simulation-tools package on Ubuntu 20.10 (Groovy Gorilla)

Package: art-nextgen-simulation-tools
Architecture: amd64
Version: 20160605+dfsg-4build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 9108
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl25 (>= 2.6), libstdc++6 (>= 9)
Suggests: art-nextgen-simulation-tools-profiles
Filename: pool/universe/a/art-nextgen-simulation-tools/art-nextgen-simulation-tools_20160605+dfsg-4build1_amd64.deb
Size: 1682772
MD5sum: 3df19648d95ec57640f7673f3000ebe5
SHA1: ae2839e9417eeaf8a65f59b41caf6e7600a9166a
SHA256: 9dd92f725de6ce83cac5028f1e83f80f0129ba6dcb63dcc8ff6f89bf4130b573
SHA512: d0dddf843b186418961735062716fecbff47a40314835f36a9cdf6b16cddd4ec0830d4825a0a82547728617bbff2b718b4585f5630fc77305aec3ba915eeeefc
Homepage: https://www.niehs.nih.gov/research/resources/software/biostatistics/art/
Description-en: simulation tools to generate synthetic next-generation sequencing reads
ART is a set of simulation tools to generate synthetic next-generation
sequencing reads. ART simulates sequencing reads by mimicking real
sequencing process with empirical error models or quality profiles
summarized from large recalibrated sequencing data. ART can also
simulate reads using user own read error model or quality profiles. ART
supports simulation of single-end, paired-end/mate-pair reads of three
major commercial next-generation sequencing platforms: Illumina's
Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to
test or benchmark a variety of method or tools for next-generation
sequencing data analysis, including read alignment, de novo assembly,
SNP and structure variation discovery. ART was used as a primary tool
for the simulation study of the 1000 Genomes Project . ART is
implemented in C++ with optimized algorithms and is highly efficient in
read simulation. ART outputs reads in the FASTQ format, and alignments
in the ALN format. ART can also generate alignments in the SAM
alignment or UCSC BED file format. ART can be used together with genome
variants simulators (e.g. VarSim) for evaluating variant calling tools
or methods.
Description-md5: 140c9fb4acb5dca0fdb6f6578b58549f