How to Install and Uninstall biobambam2 Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 16,2024

1. Install "biobambam2" package

Please follow the step by step instructions below to install biobambam2 on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                biobambam2
            
                    
    
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2. Uninstall "biobambam2" package

This tutorial shows how to uninstall biobambam2 on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                biobambam2
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the biobambam2 package on Ubuntu 20.10 (Groovy Gorilla)

Package: biobambam2
Architecture: amd64
Version: 2.0.173+ds-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 56892
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libmaus2-2 (>= 2.0.740+dfsg), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), zlib1g-dev
Filename: pool/universe/b/biobambam2/biobambam2_2.0.173+ds-1_amd64.deb
Size: 8747172
MD5sum: 3b3f87f1d61b3bea6964d41c7f1a9fdd
SHA1: 4df9ec466145463ecb9813740af25b8ab26c6a10
SHA256: 2036df5727cba321d4e883f89e52b084b633bc6643f4f9d275f8b8d580e793b8
SHA512: 4a406afa674c33da68309a35c6fe3920562d4e5838153e5a2c6658c759f53145969a13e292dbaa1785a9fa43354dd73694c1447f992a7b52832931ab0f327037
Homepage: https://gitlab.com/german.tischler/biobambam2
Description-en: tools for early stage alignment file processing
This package contains some tools for processing BAM files, including
.
bamsormadup: parallel sorting and duplicate marking
bamcollate2: reads BAM and writes BAM reordered such that alignment
or collated by query name
bammarkduplicates: reads BAM and writes BAM with duplicate alignments
marked using the BAM flags field
bammaskflags: reads BAM and writes BAM while masking (removing) bits
from the flags column
bamrecompress: reads BAM and writes BAM with a defined compression
setting. This tool is capable of multi-threading.
bamsort: reads BAM and writes BAM resorted by coordinates or
query name
bamtofastq: reads BAM and writes FastQ; output can be collated
or uncollated by query name
Description-md5: 988ecf132d35e18278833435cc2ed73f