How to Install and Uninstall biobambam2 Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 24,2024

1. Install "biobambam2" package

Please follow the guidance below to install biobambam2 on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                biobambam2
            
                    
    
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2. Uninstall "biobambam2" package

Please follow the steps below to uninstall biobambam2 on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                biobambam2
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the biobambam2 package on Ubuntu 21.10 (Impish Indri)

Package: biobambam2
Architecture: amd64
Version: 2.0.179+ds-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 66146
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libmaus2-2 (>= 2.0.768+dfsg), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4)
Filename: pool/universe/b/biobambam2/biobambam2_2.0.179+ds-1_amd64.deb
Size: 9442336
MD5sum: 8dbbf3d823b8810040225bccefbfd228
SHA1: 6e81cd06a9bb19d05738012a78fdb0e7192eb6d1
SHA256: 8c4918b2738f8c92fa45cf5c86ef0ea78a93f16e5ca87aa291b8008232174881
SHA512: 69b77e308653422e7c428dd8780a9847f7737f13fe839150fc8cd10e8d472f82298bdb1d6fd7ec7a55f1df4f606d62846d9c8f91daa86d98bc03e6e2a37197d6
Homepage: https://gitlab.com/german.tischler/biobambam2
Description-en: tools for early stage alignment file processing
This package contains some tools for processing BAM files, including
.
bamsormadup: parallel sorting and duplicate marking
bamcollate2: reads BAM and writes BAM reordered such that alignment
or collated by query name
bammarkduplicates: reads BAM and writes BAM with duplicate alignments
marked using the BAM flags field
bammaskflags: reads BAM and writes BAM while masking (removing) bits
from the flags column
bamrecompress: reads BAM and writes BAM with a defined compression
setting. This tool is capable of multi-threading.
bamsort: reads BAM and writes BAM resorted by coordinates or
query name
bamtofastq: reads BAM and writes FastQ; output can be collated
or uncollated by query name
Description-md5: 988ecf132d35e18278833435cc2ed73f