How to Install and Uninstall gatb-core Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: September 20,2024

1. Install "gatb-core" package

Learn how to install gatb-core on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gatb-core
            
                    
    
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2. Uninstall "gatb-core" package

This tutorial shows how to uninstall gatb-core on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                gatb-core
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gatb-core package on Ubuntu 20.10 (Groovy Gorilla)

Package: gatb-core
Architecture: amd64
Version: 1.4.2+dfsg-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 18694
Depends: libc6 (>= 2.29), libcppunit-1.15-0, libgcc-s1 (>= 3.4), libhdf5-103-1, libstdc++6 (>= 9), zlib1g (>= 1:1.2.6)
Filename: pool/universe/g/gatb-core/gatb-core_1.4.2+dfsg-5_amd64.deb
Size: 2563008
MD5sum: b332dc5c432919e4cc12a94e751276ce
SHA1: 29ece80e7bd9001267638252b5429263ce706f4e
SHA256: 6a6689384aa91daf29116bf0ec438e9fd52e02ec8c35895b6eed9de1e41c4a4f
SHA512: af88188e38ad9fe1c302546bf9e48681590d49bb5d8d47156be7d8ba1316ae2bf51423515900bba41c51336c2818e8e89f190a24817b6ccc698e92482604d690
Homepage: https://github.com/GATB/gatb-core
Description-en: Genome Analysis Toolbox with de-Bruijn graph
The GATB-CORE project provides a set of highly efficient
algorithms to analyse NGS data sets. These methods enable
the analysis of data sets of any size on multi-core desktop
computers, including very huge amount of reads data coming
from any kind of organisms such as bacteria, plants,
animals and even complex samples (e.g. metagenomes).
Read more about GATB at https://gatb.inria.fr/.
By itself GATB-CORE is not an NGS data analysis tool.
However, it can be used to create such tools. There already
exist a set of ready-to-use tools relying on GATB-CORE
library: see https://gatb.inria.fr/software/
Description-md5: 7fb8b874b800dfaad088eff4ae5d0206