How to Install and Uninstall smalt-examples Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 22,2024

1. Install "smalt-examples" package

Please follow the instructions below to install smalt-examples on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                smalt-examples
            
                    
    
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2. Uninstall "smalt-examples" package

Learn how to uninstall smalt-examples on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                smalt-examples
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the smalt-examples package on Ubuntu 20.10 (Groovy Gorilla)

Package: smalt-examples
Architecture: all
Version: 0.7.6-9
Priority: optional
Section: universe/science
Source: smalt
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 70233
Filename: pool/universe/s/smalt/smalt-examples_0.7.6-9_all.deb
Size: 71870968
MD5sum: a66d17a5f07dd608c3e427f3e3dbde87
SHA1: 1abfc23541b25a7b3244b06a480008550082770d
SHA256: 9038eb2da2e242a60e0ddf8bb92262a2fe9711ce27901f4ebac3b37cc7f8a1d8
SHA512: ab1b25ccb568a3573ead7d66e5cc4ab94e4e9870d04e1528513dfd16db77add001357a2c6dc8295a92df893ecd23cf684a0f4b7ff0c455b1a8f4ee225e355d83
Homepage: https://www.sanger.ac.uk/science/tools/smalt-0
Description-en: Sequence Mapping and Alignment Tool (examples)
SMALT efficiently aligns DNA sequencing reads with a reference genome.
Reads from a wide range of sequencing platforms, for example Illumina,
Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
paired reads.
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The software employs a perfect hash index of short words (< 20
nucleotides long), sampled at equidistant steps along the genomic
reference sequences.
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For each read, potentially matching segments in the reference are
identified from seed matches in the index and subsequently aligned with
the read using a banded Smith-Waterman algorithm.
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The best gapped alignments of each read is reported including a score
for the reliability of the best mapping. The user can adjust the
trade-off between sensitivity and speed by tuning the length and spacing
of the hashed words.
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A mode for the detection of split (chimeric) reads is provided.
Multi-threaded program execution is supported.
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This package contains example data and a test suite to test the data.
Description-md5: 6624909295e5d06dd367e61a5864d768