How to Install and Uninstall smalt-examples Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: December 22,2024

1. Install "smalt-examples" package

This is a short guide on how to install smalt-examples on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                smalt-examples
            
                    
    
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2. Uninstall "smalt-examples" package

In this section, we are going to explain the necessary steps to uninstall smalt-examples on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                smalt-examples
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the smalt-examples package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: smalt-examples
Priority: optional
Section: universe/science
Installed-Size: 70250
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Source: smalt
Version: 0.7.6-4
Filename: pool/universe/s/smalt/smalt-examples_0.7.6-4_all.deb
Size: 71880924
MD5sum: cb249572090fc5b2e931f524d4b5246f
SHA1: de62e9f969df77bf02e953514d0a25bf41adc76b
SHA256: 29dc57a7b1915e8fbe0281d69218103e29538ce2874dbaa221c8ff04f49054a6
Description-en: Sequence Mapping and Alignment Tool (examples)
SMALT efficiently aligns DNA sequencing reads with a reference genome.
It Reads from a wide range of sequencing platforms, for example Illumina,
Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
paired reads.
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The software employs a perfect hash index of short words (< 20
nucleotides long), sampled at equidistant steps along the genomic
reference sequences.
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For each read, potentially matching segments in the reference are
identified from seed matches in the index and subsequently aligned with
the read using a banded Smith-Waterman algorithm.
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The best gapped alignments of each read is reported including a score
for the reliability of the best mapping. The user can adjust the
trade-off between sensitivity and speed by tuning the length and spacing
of the hashed words.
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A mode for the detection of split (chimeric) reads is provided.
Multi-threaded program execution is supported.
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This package contains example data and a test suite to test the data.
Description-md5: 5b08e1aad3c9700ba0dad3c6fd9f793f
Homepage: http://www.sanger.ac.uk/resources/software/smalt/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu