How to Install and Uninstall snap-aligner Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "snap-aligner" package

This tutorial shows how to install snap-aligner on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                snap-aligner
            
                    
    
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2. Uninstall "snap-aligner" package

This is a short guide on how to uninstall snap-aligner on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                snap-aligner
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the snap-aligner package on Ubuntu 20.10 (Groovy Gorilla)

Package: snap-aligner
Architecture: amd64
Version: 1.0~beta.18+dfsg-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 13510
Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.2)
Filename: pool/universe/s/snap-aligner/snap-aligner_1.0~beta.18+dfsg-4_amd64.deb
Size: 1650592
MD5sum: 5cfbf9d930faeed38634ac8409659efb
SHA1: afb3c6ffc6dbcb6be4b8d312df61a78a585ad139
SHA256: 4497b2f99735d14d48e57ca6b980e49f97068b77d813b82f485bc1f49c26c009
SHA512: 1151b29be6650c4cb691ccba8d8ed932bf34eb5d2723c18f7529a103ed028dce4a0e94f51e35240456c0ca64516e3b89e471537a05d538974802ca446864240f
Homepage: http://snap.cs.berkeley.edu/
Description-en: Scalable Nucleotide Alignment Program
SNAP is a new sequence aligner that is 3-20x faster and just as accurate as
existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86
processors, and supports a rich error model that lets it cheaply match reads
with more differences from the reference than other tools. This gives SNAP up
to 2x lower error rates than existing tools (in some cases) and lets it match
larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or
gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting,
duplicate marking, and BAM indexing.
Description-md5: e1cd6bb8b6f6e28f36553bfa5a8636a5