How to Install and Uninstall sprai Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 27,2024

1. Install "sprai" package

Please follow the guidance below to install sprai on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                sprai
            
                    
    
    Copied

2. Uninstall "sprai" package

This guide covers the steps necessary to uninstall sprai on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                sprai
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the sprai package on Ubuntu 20.10 (Groovy Gorilla)

Package: sprai
Architecture: amd64
Version: 0.9.9.23+dfsg1-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1710
Depends: libc6 (>= 2.7), perl:any, ncbi-blast+, time
Suggests: pbh5tools, pbgenomicconsensus, pbalign, make
Filename: pool/universe/s/sprai/sprai_0.9.9.23+dfsg1-2_amd64.deb
Size: 1510264
MD5sum: 40fae4452c2525cd7f724ab72e7c56f9
SHA1: d6b4ed744feb5ece88021771f17c1c8f99add3dc
SHA256: 23d87bd0da6df7c740c655e3fbd924a54f0480bf1e9adf695c351b6235e925b0
SHA512: 9ae1a10fd917a6fbd8031ea746537ef02c8a036bf9395095a0325c0b80374e8da70d38def92c73e96d3ffcb2d670f59bf5cd01f8d9682d1b7b57e3652f414917
Homepage: https://web.archive.org/web/20180316202959/http://zombie.cb.k.u-tokyo.ac.jp/sprai/
Description-en: single-pass sequencing read accuracy improver
Sprai is a tool to correct sequencing errors in single-pass reads for
de novo assembly. It is originally designed for correcting sequencing
errors in single-molecule DNA sequencing reads, especially in Continuous
Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is
not maximizing the accuracy of error-corrected reads. Instead, Sprai aims
at maximizing the continuity (i.e., N50 contig length) of assembled contigs
after error correction.
Description-md5: 31aa7bc49f29e00fa2d3e5c2c24629a1