How to Install and Uninstall sra-toolkit Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "sra-toolkit" package

This is a short guide on how to install sra-toolkit on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                sra-toolkit
            
                    
    
    Copied

2. Uninstall "sra-toolkit" package

Please follow the guidance below to uninstall sra-toolkit on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                sra-toolkit
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the sra-toolkit package on Ubuntu 20.10 (Groovy Gorilla)

Package: sra-toolkit
Architecture: amd64
Version: 2.10.7+dfsg-1
Priority: optional
Section: universe/science
Source: sra-sdk
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 11577
Depends: libc6 (>= 2.29), libfuse2 (>= 2.6), libkdf5-2 (>= 2.10.7+dfsg), libmagic1 (>= 5.12), libncbi-vdb2 (>= 2.10.7+dfsg), libncbi-wvdb2 (>= 2.10.7+dfsg), libstdc++6 (>= 5.2), libxml2 (>= 2.7.4), zlib1g (>= 1:1.2.2)
Recommends: med-config (>= 2.1)
Filename: pool/universe/s/sra-sdk/sra-toolkit_2.10.7+dfsg-1_amd64.deb
Size: 5307636
MD5sum: 7862f4fe8a0d60a143fca2fb70fc77c9
SHA1: 150f48870c9667a21e4f8ea077983480b7d22b0e
SHA256: f57fbafb22d4d84d183b3e0a0d54c1b37e4e62b20daf30d0e0f351e3ebc4bea9
SHA512: b73f06c349197bf3c0201c18cf42bc23112318fc46bf1756a5c92d1eafa9af378fbbee900c502a950441e298ae56416ca123f4ebdb4cf67cc7741b131ecea83a
Homepage: https://github.com/ncbi/sra-tools/
Description-en: utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs
into some commonly used format such as fastq.
.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this
release as an aid in visual inspection. It is likely that their
actual output formatting will be changed in the near future to a
stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON
THE OUTPUT FORMAT SEEN IN THIS RELEASE.
.
Other tools distributed in this package are:
abi-dump, abi-load
align-info
bam-load
cache-mgr
cg-load
copycat
fasterq-dump
fastq-dump, fastq-load
helicos-load
illumina-dump, illumina-load
kar
kdbmeta
latf-load
pacbio-load
prefetch
rcexplain
remote-fuser
sff-dump, sff-load
sra-pileup, sra-sort, sra-stat, srapath
srf-load
test-sra
vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock,
vdb-passwd, vdb-unlock, vdb-validate
.
The "help" information will be improved in near future releases, and
the tool options will become standardized across the set. More documentation
will also be provided documentation on the NCBI web site.
.
Tool options may change in the next release. Version 1 tool options
will remain supported wherever possible in order to preserve
operation of any existing scripts.
Description-md5: 1a61cd8ef6f417d5f86c6c13697e7a05