How to Install and Uninstall sra-toolkit Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "sra-toolkit" package

This guide let you learn how to install sra-toolkit on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                sra-toolkit
            
                    
    
    Copied

2. Uninstall "sra-toolkit" package

Please follow the instructions below to uninstall sra-toolkit on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                sra-toolkit
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the sra-toolkit package on Ubuntu 21.10 (Impish Indri)

Package: sra-toolkit
Architecture: amd64
Version: 2.10.9+dfsg-2
Priority: optional
Section: universe/science
Source: sra-sdk
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 10226
Depends: libc6 (>= 2.33), libfuse2 (>= 2.6), libkdf5-2 (>= 2.10.9+dfsg), libmagic1 (>= 5.12), libncbi-vdb2 (>= 2.10.9+dfsg), libncbi-wvdb2 (>= 2.10.9+dfsg), libstdc++6 (>= 5.2), libxml2 (>= 2.7.4), zlib1g (>= 1:1.2.2)
Recommends: med-config (>= 2.1)
Filename: pool/universe/s/sra-sdk/sra-toolkit_2.10.9+dfsg-2_amd64.deb
Size: 5163152
MD5sum: 5e9a34426ba32aaf511f99a55d45156a
SHA1: 221a6bbc3fd7410797d1cad6d70ef04e5709ab9c
SHA256: 69c1c0e13c66574b4ae7b56f3609d68b9fd3472029dc8c95fe4e46785b97d305
SHA512: cb17c61e69628ba5007dea79a5541377cd34131b4ff820725c51b43ccc6cc8115ef417137db7c469adee2dcff052fd0a10f821f878eca4fb7899fa397d08ee7a
Homepage: https://github.com/ncbi/sra-tools/
Description-en: utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs
into some commonly used format such as fastq.
.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this
release as an aid in visual inspection. It is likely that their
actual output formatting will be changed in the near future to a
stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON
THE OUTPUT FORMAT SEEN IN THIS RELEASE.
.
Other tools distributed in this package are:
abi-dump, abi-load
align-info
bam-load
cache-mgr
cg-load
copycat
fasterq-dump
fastq-dump, fastq-load
helicos-load
illumina-dump, illumina-load
kar
kdbmeta
latf-load
pacbio-load
prefetch
rcexplain
remote-fuser
sff-dump, sff-load
sra-pileup, sra-sort, sra-stat, srapath
srf-load
test-sra
vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock,
vdb-passwd, vdb-unlock, vdb-validate
.
The "help" information will be improved in near future releases, and
the tool options will become standardized across the set. More documentation
will also be provided documentation on the NCBI web site.
.
Tool options may change in the next release. Version 1 tool options
will remain supported wherever possible in order to preserve
operation of any existing scripts.
Description-md5: 1a61cd8ef6f417d5f86c6c13697e7a05