How to Install and Uninstall stringtie Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "stringtie" package

This guide covers the steps necessary to install stringtie on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                stringtie
            
                    
    
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2. Uninstall "stringtie" package

Please follow the steps below to uninstall stringtie on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                stringtie
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the stringtie package on Ubuntu 20.10 (Groovy Gorilla)

Package: stringtie
Architecture: amd64
Version: 2.1.2+ds-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1107
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.4), libhts3 (>= 1.10), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.2.3.3)
Filename: pool/universe/s/stringtie/stringtie_2.1.2+ds-1_amd64.deb
Size: 426376
MD5sum: 96d5812d277c4bd1c919cc8af1e146af
SHA1: 72f2d933ee6e087a37d285734fb9ab406111c309
SHA256: 607cf41a05254992305965748200fc118795272efe676831844282d1130a3be1
SHA512: 244e3975ab6716ecebab42767fc6ced0a090626449e5ab2792b550fd79b54555b3ca0b51ebd952749ce074df3c3243d67ecd3c2e599f24e3bfda3b4c7ace84cd
Homepage: http://ccb.jhu.edu/software/stringtie/
Description-en: assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample
can be determined by RNA sequencing. The exact sequence
sampled may be random, depending on the technology used.
And it may be short, i.e. shorter than the transcript.
At some point, many shorter reads need to be assembled
to the model the complete transcripts.
.
StringTie knows how to assemble of RNA-Seq into potential
transcripts without the need of a reference genome and
provides a quantification also of the splice variants.
Description-md5: 33fe9cf33d0e879e8926fb896570750e