How to Install and Uninstall stringtie Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 15,2024

1. Install "stringtie" package

This guide covers the steps necessary to install stringtie on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                stringtie
            
                    
    
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2. Uninstall "stringtie" package

Please follow the guidelines below to uninstall stringtie on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                stringtie
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the stringtie package on Ubuntu 21.10 (Impish Indri)

Package: stringtie
Architecture: amd64
Version: 2.1.4+ds-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1026
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.4), libhts3 (>= 1.10), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.2.3.3)
Recommends: stringtie-examples
Suggests: cufflinks
Filename: pool/universe/s/stringtie/stringtie_2.1.4+ds-4_amd64.deb
Size: 408056
MD5sum: 9de96272f0116654091cd3d85bca9233
SHA1: d8b0c1eea0a2a1bd411e04162d97c23882d9dfaf
SHA256: 432beccbed25f1f6681dae91803d0d43984658baf48480ec087e60e9316488df
SHA512: 2ea8d72566089efab8ed05d56af5b5f0b3208c3fe463b65afb2ae050a42500b742157c38fd5982c0f551d30f283b336c366b8220f6c3b44c3f81d4234af44e0a
Homepage: https://ccb.jhu.edu/software/stringtie/
Description-en: assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample
can be determined by RNA sequencing. The exact sequence
sampled may be random, depending on the technology used.
And it may be short, i.e. shorter than the transcript.
At some point, many shorter reads need to be assembled
to the model the complete transcripts.
.
StringTie knows how to assemble of RNA-Seq into potential
transcripts without the need of a reference genome and
provides a quantification also of the splice variants.
Description-md5: 33fe9cf33d0e879e8926fb896570750e