How to Install and Uninstall tiddit Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: April 25,2024

1. Install "tiddit" package

This tutorial shows how to install tiddit on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                tiddit
            
                    
    
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2. Uninstall "tiddit" package

Learn how to uninstall tiddit on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                tiddit
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the tiddit package on Ubuntu 20.10 (Groovy Gorilla)

Package: tiddit
Architecture: amd64
Version: 2.12.0+dfsg-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1119
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3 (<< 3.9), python3 (>= 3.8~), python3:any
Filename: pool/universe/t/tiddit/tiddit_2.12.0+dfsg-2_amd64.deb
Size: 303808
MD5sum: 5179dd8582a35b2f523c5eee89a855ad
SHA1: b9e17227a5ca8d8020e0a9769f400790887916ab
SHA256: 76956a2ce2eb5f4a2782a5077e577aa356449d8fa728ad672b4cce6aedc3d1ba
SHA512: af0993b2a7cafcb6864fed703abee9e9663cca533f4965d7f2e90521fe471edd637b33e28686d7acf75b88dd692abc49916217ff488831f6811e235e54722c8e
Homepage: https://github.com/SciLifeLab/TIDDIT
Description-en: structural variant calling
TIDDIT is a tool to used to identify chromosomal rearrangements using
Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter-
chromosomal translocations, deletions, tandem-duplications and
inversions, using supplementary alignments as well as discordant pairs.
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TIDDIT has two analysis modules. The sv mode, which is used to search
for structural variants. And the cov mode that analyse the read depth of
a bam file and generates a coverage report.
Description-md5: 37a0087022d5d71f800476b54f88b669