How to Install and Uninstall tiddit Package on Ubuntu 21.10 (Impish Indri)

Last updated: April 26,2024

1. Install "tiddit" package

Here is a brief guide to show you how to install tiddit on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                tiddit
            
                    
    
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2. Uninstall "tiddit" package

This tutorial shows how to uninstall tiddit on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                tiddit
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the tiddit package on Ubuntu 21.10 (Impish Indri)

Package: tiddit
Architecture: amd64
Version: 2.12.0+dfsg-3build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1059
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3 (<< 3.10), python3 (>= 3.9~), python3:any
Filename: pool/universe/t/tiddit/tiddit_2.12.0+dfsg-3build1_amd64.deb
Size: 250872
MD5sum: 9a116a3febfa4c2a9112c7ab71b66495
SHA1: a0f402cd5056bd5805f640a27c3d7542cf8948b7
SHA256: 031ece4a0ee90eaca0e82021a40d30f5441d28f2616fb3ad75cf4c8bbc33e5f2
SHA512: 06d16cbcba7b93aac2d6d4efe6dc3905e4db1b444dd750618fb0c50cabb6feb7b107feacf0fabc7d587f7ecc73fd8972519fc414acbf8177ec9124b3ed6f7b70
Homepage: https://github.com/SciLifeLab/TIDDIT
Description-en: structural variant calling
TIDDIT is a tool to used to identify chromosomal rearrangements using
Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter-
chromosomal translocations, deletions, tandem-duplications and
inversions, using supplementary alignments as well as discordant pairs.
.
TIDDIT has two analysis modules. The sv mode, which is used to search
for structural variants. And the cov mode that analyse the read depth of
a bam file and generates a coverage report.
Description-md5: 37a0087022d5d71f800476b54f88b669