Complete Guide: Installing umis on Ubuntu 20.10 (Groovy Gorilla) 2024

1. Install "umis" package

This tutorial shows how to install umis on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                umis
            
                    
    
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2. Uninstall "umis" package

Please follow the steps below to uninstall umis on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                umis
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the umis package on Ubuntu 20.10 (Groovy Gorilla)

Package: umis
Architecture: amd64
Version: 1.0.7-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 115
Depends: libc6 (>= 2.4), python3 (<< 3.9), python3 (>= 3.8~), python3-click, python3-pandas, python3-pysam, python3-regex, python3-scipy, python3-toolz, python3:any
Suggests: umis-examples
Filename: pool/universe/u/umis/umis_1.0.7-1_amd64.deb
Size: 24036
MD5sum: 696279dbda6d2814737b9c93aadff0e8
SHA1: d0e9baa03aeb4fb2750b6b7d8f77c29cfd309c13
SHA256: 8880be8943e796d6520978b74e3189a57354d8e138746eed49cca86f1f5615d6
SHA512: f986ac65648fea966260e09ab5b71cb52ecb9a0ab4e5e115a4bbb5e0e708a6def2dc06bfcf01b41c28fc9b835a2ddf68aae1dad3839577bd211ee93a950b6ad3
Homepage: https://github.com/vals/umis
Description-en: tools for processing UMI RNA-tag data
Umis provides tools for estimating expression in RNA-Seq data which
performs sequencing of end tags of transcript, and incorporate molecular
tags to correct for amplification bias.
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There are four steps in this process.
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1. Formatting reads
2. Filtering noisy cellular barcodes
3. Pseudo-mapping to cDNAs
4. Counting molecular identifiers
Description-md5: a3b735a2910d31a823cc6d0b3e6915f6