Complete Guide: Installing vg on Ubuntu 20.10 (Groovy Gorilla) 2024

1. Install "vg" package

This is a short guide on how to install vg on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                vg
            
                    
    
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2. Uninstall "vg" package

In this section, we are going to explain the necessary steps to uninstall vg on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                vg
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the vg package on Ubuntu 20.10 (Groovy Gorilla)

Package: vg
Architecture: amd64
Version: 1.25.0+ds-3build1
Built-Using: simde (= 0.0.0.git.20200424-1)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 154989
Depends: libatomic1 (>= 4.8), libboost-program-options1.71.0, libc6 (>= 2.29), libcairo2 (>= 1.2.4), libdivsufsort3 (>= 2.0.1), libdw1 (>= 0.126), libfastahack0 (>= 0.0+git20160702.bbc645f), libgcc-s1 (>= 4.2), libgomp1 (>= 6), libhts3 (>= 1.10), libjansson4 (>= 2.2), libjemalloc2 (>= 5.0.0), libprotobuf23 (>= 3.12.3), libraptor2-0 (>= 2.0.14), librocksdb5.17, libssw0 (>= 1.1), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.1+dfsg), zlib1g (>= 1:1.1.4)
Conflicts: cgvg
Filename: pool/universe/v/vg/vg_1.25.0+ds-3build1_amd64.deb
Size: 42214768
MD5sum: 696744f79c3df2f72d1a8ca0c9ab89b7
SHA1: 774c373f20364f8a0fb9b903964253a679908b19
SHA256: 0f0761e8c348e3a3ae9ee2afc45c5321baa752399267bd6b7cb9a84948e7bd10
SHA512: 62d8d1c90864d95838868fb0c948b6815804dcc19241166025d99765826eb4c767cfda66a8fcb9c5515d556624e7f0b20161e3bb05c0a8d4b03016b66b9d87ed
Homepage: https://github.com/vgteam/vg#vg
Description-en: tools for working with genome variation graphs
variation graph data structures, interchange formats, alignment, genotyping,
and variant calling methods
.
Variation graphs provide a succinct encoding of the sequences of many genomes.
A variation graph (in particular as implemented in vg) is composed of:
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- nodes, which are labeled by sequences and ids
- edges, which connect two nodes via either of their respective ends
- paths, describe genomes, sequence alignments, and annotations (such as gene
models and transcripts) as walks through nodes connected by edges
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This model is similar to a number of sequence graphs that have been used in
assembly and multiple sequence alignment. Paths provide coordinate systems
relative to genomes encoded in the graph, allowing stable mappings to be
produced even if the structure of the graph is changed.
Description-md5: aa716bf1d6e03589adbce53037024686