Complete Guide: Installing vg on Ubuntu 21.10 (Impish Indri) 2024

1. Install "vg" package

Please follow the step by step instructions below to install vg on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                vg
            
                    
    
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2. Uninstall "vg" package

Please follow the steps below to uninstall vg on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                vg
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the vg package on Ubuntu 21.10 (Impish Indri)

Package: vg
Architecture: amd64
Version: 1.30.0+ds-1
Built-Using: simde (= 0.7.2-3)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 178545
Depends: libatomic1 (>= 4.8), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.29), libcairo2 (>= 1.2.4), libdivsufsort3 (>= 2.0.1), libdw1 (>= 0.126), libfastahack0 (>= 0.0+git20160702.bbc645f), libgcc-s1 (>= 4.2), libgomp1 (>= 6), libhts3 (>= 1.10), libjansson4 (>= 2.2), libjemalloc2 (>= 5.0.0), libraptor2-0 (>= 2.0.14), libssw0 (>= 1.1), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.1+dfsg), zlib1g (>= 1:1.1.4)
Conflicts: cgvg
Filename: pool/universe/v/vg/vg_1.30.0+ds-1_amd64.deb
Size: 49187196
MD5sum: 0987f8a12e70dc1c5308022b4c0e121e
SHA1: 602fa4da6c8bceb9233009737fa8b47dda982db5
SHA256: 126d14719dd90fa00d601717c17cfccbd10c89436835cfd983f06535cfaa94bc
SHA512: 49cab30c0225eb811957d62b6b9449316d5a16a94bfca36d3b1b503e08f2e44637d6a4936ef2de3000915f17fd3d81f143cc0a6b75e874744ade59344bad4312
Homepage: https://github.com/vgteam/vg#vg
Description-en: tools for working with genome variation graphs
variation graph data structures, interchange formats, alignment, genotyping,
and variant calling methods
.
Variation graphs provide a succinct encoding of the sequences of many genomes.
A variation graph (in particular as implemented in vg) is composed of:
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- nodes, which are labeled by sequences and ids
- edges, which connect two nodes via either of their respective ends
- paths, describe genomes, sequence alignments, and annotations (such as gene
models and transcripts) as walks through nodes connected by edges
.
This model is similar to a number of sequence graphs that have been used in
assembly and multiple sequence alignment. Paths provide coordinate systems
relative to genomes encoded in the graph, allowing stable mappings to be
produced even if the structure of the graph is changed.
Description-md5: aa716bf1d6e03589adbce53037024686