How to Install and Uninstall voronota Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "voronota" package

In this section, we are going to explain the necessary steps to install voronota on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                voronota
            
                    
    
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2. Uninstall "voronota" package

In this section, we are going to explain the necessary steps to uninstall voronota on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                voronota
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the voronota package on Ubuntu 20.10 (Groovy Gorilla)

Package: voronota
Architecture: amd64
Version: 1.21.2744-1build1
Priority: extra
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Science Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 10833
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 9)
Filename: pool/universe/v/voronota/voronota_1.21.2744-1build1_amd64.deb
Size: 1926100
MD5sum: 2e71b2f702f613362bfe9e0790859462
SHA1: f3f1b70423ba6c5e6d05d17eac3b7960ae3088f4
SHA256: c505300d5c9d0d429021e3d6c4687166943d9aa7924d19a8cb5287effcb78341
SHA512: bf403b0023d8d9d7a99edcd5b130de6569f2234d6b9a7c01f715eaf539c0374704a67a83c802112a7a6d797fddbbfb2894e50977d380583b1f098e931bd34be9
Homepage: https://bitbucket.org/kliment/voronota
Description-en: Voronoi diagram-based tool to find atom contacts
The analysis of macromolecular structures often requires a comprehensive
definition of atomic neighborhoods. Such a definition can be based on the
Voronoi diagram of balls, where each ball represents an atom of some van
der Waals radius. Voronota is a software tool for finding all the
vertices of the Voronoi diagram of balls. Such vertices correspond to the
centers of the empty tangent spheres defined by quadruples of balls.
Voronota is especially suitable for processing three-dimensional
structures of biological macromolecules such as proteins and RNA.
.
Since version 1.2 Voronota also uses the Voronoi vertices to construct
inter-atom contact surfaces and solvent accessible surfaces. Voronota
provides tools to query contacts, generate contacts graphics, compare
contacts and evaluate quality of protein structural models using
contacts.
Description-md5: 406a01a6edd5b72aa5a80fb00f49f33e