How to Install and Uninstall voronota Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 27,2024

1. Install "voronota" package

Please follow the step by step instructions below to install voronota on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                voronota
            
                    
    
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2. Uninstall "voronota" package

Please follow the instructions below to uninstall voronota on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                voronota
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the voronota package on Ubuntu 21.10 (Impish Indri)

Package: voronota
Architecture: amd64
Version: 1.22.3149-1
Priority: extra
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Science Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 11527
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 9)
Filename: pool/universe/v/voronota/voronota_1.22.3149-1_amd64.deb
Size: 2055696
MD5sum: 5e6a167ce6c26c60570b45c22c35894e
SHA1: 0ce3f7a72a9aa05ce8f1aed925789f522414073a
SHA256: 63a5bef34931fed0ffeb8d892792dfcc152ef655eb6de340392f82ed4ba9c15b
SHA512: 190a7edeb14578a232cf3a812487714be233e63a7be6bb702af09d083d97787ea030a05672dce9b390b7938c7f20bef41cbf397f689007289b9c0706c6d28bb2
Homepage: https://bitbucket.org/kliment/voronota
Description-en: Voronoi diagram-based tool to find atom contacts
The analysis of macromolecular structures often requires a comprehensive
definition of atomic neighborhoods. Such a definition can be based on the
Voronoi diagram of balls, where each ball represents an atom of some van
der Waals radius. Voronota is a software tool for finding all the
vertices of the Voronoi diagram of balls. Such vertices correspond to the
centers of the empty tangent spheres defined by quadruples of balls.
Voronota is especially suitable for processing three-dimensional
structures of biological macromolecules such as proteins and RNA.
.
Since version 1.2 Voronota also uses the Voronoi vertices to construct
inter-atom contact surfaces and solvent accessible surfaces. Voronota
provides tools to query contacts, generate contacts graphics, compare
contacts and evaluate quality of protein structural models using
contacts.
Description-md5: 406a01a6edd5b72aa5a80fb00f49f33e