How to Install and Uninstall atac Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: May 10,2024

1. Install "atac" package

Please follow the guidelines below to install atac on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                atac
            
                    
    
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2. Uninstall "atac" package

Learn how to uninstall atac on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                atac
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the atac package on Ubuntu 21.04 (Hirsute Hippo)

Package: atac
Architecture: amd64
Version: 0~20150903+r2013-8build1
Priority: optional
Section: universe/science
Source: kmer
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2765
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), python3 (<< 3.10), python3 (>= 3.9~), python3.9, python3:any, perl:any, libfile-which-perl, leaff, meryl, gnuplot
Recommends: kmer-examples
Filename: pool/universe/k/kmer/atac_0~20150903+r2013-8build1_amd64.deb
Size: 374176
MD5sum: 89bbb3b59d0a607c8dda48b144b0a102
SHA1: 6924f1923e19daca94d093286d2726d2ef3f41b0
SHA256: d7d60c4624c37d41a1347712f05e6ca94c6def462da378fd81498b6d42365ce6
SHA512: d7beed5fe6a0a5b2c1cff6bdd511e2d60a75731d9669b8207feaf18b1193bfb042c22579edc1eda24223a00f4dea095956d9179e9f4c72aaf2918ed06d115d19
Homepage: http://kmer.sourceforge.net
Description-en: genome assembly-to-assembly comparison
atac computes a one-to-one pairwise alignment of large DNA sequences. It first
finds the unique k-mers in each sequence, chains them to larger blocks, and
fills in spaces between blocks. It was written primarily to transfer
annotations between different assemblies of the human genome.
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The output is a set of ungapped 'matches', and a set of gapped 'runs' formed
from the matches. Each match or run associates one sequence with the other
sequence. The association is 'unique', in that there is no other (sizeable)
associations for either sequence. Thus, large repeats and duplications are not
present in the output - they appear as unmapped regions.
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Though the output is always pairwise, atac can cache intermediate results to
speed a comparisons of multiple sequences.
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This package is part of the Kmer suite.
Description-md5: 7c0df19216e3aa53e4831aab9fc46b7e