How to Install and Uninstall idba Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: November 22,2024

1. Install "idba" package

Please follow the guidelines below to install idba on Ubuntu 21.04 (Hirsute Hippo)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                idba
            
                    
    
    Copied

2. Uninstall "idba" package

Please follow the instructions below to uninstall idba on Ubuntu 21.04 (Hirsute Hippo):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                idba
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the idba package on Ubuntu 21.04 (Hirsute Hippo)

Package: idba
Architecture: amd64
Version: 1.1.3-7
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4222
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 5.2), python3
Filename: pool/universe/i/idba/idba_1.1.3-7_amd64.deb
Size: 657560
MD5sum: c4ea4784c8cff7b4d9cdb7f32f8bc4df
SHA1: 2cdda6cfa67474092de84565b8c44cac983a7be8
SHA256: 4a3c8fb7a92b9a0f2f92d3012b74bb35e50ef5c2cb125090c05cbad4069ae9e6
SHA512: 38bce8f021cefe9c895471f286aec2ed624105ffd1a3ebfad7012662a1b91e70bf3f47f38daed7efd64c1bfb790bc60d5d7d83acf1344000202e5c35db030c63
Homepage: https://github.com/loneknightpy/idba
Description-en: iterative De Bruijn Graph short read assemblers
IDBA stands for iterative de Bruijn graph assembler. In computational
sequence biology, an assembler solves the puzzle coming from large
sequencing machines that feature many gigabytes of short reads from a
large genome.
.
This package provides several flavours of the IDBA assembler, as they all
share the same source tree but serve different purposes and evolved over time.
.
IDBA is the basic iterative de Bruijn graph assembler for
second-generation sequencing reads. IDBA-UD, an extension of IDBA,
is designed to utilize paired-end reads to assemble low-depth regions
and use progressive depth on contigs to reduce errors in high-depth
regions. It is a generic purpose assembler and especially good for
single-cell and metagenomic sequencing data. IDBA-Hybrid is another
update version of IDBA-UD, which can make use of a similar reference
genome to improve assembly result. IDBA-Tran is an iterative de Bruijn
graph assembler for RNA-Seq data.
Description-md5: 42263fd178b76409cff6e6b610ab7ec1