How to Install and Uninstall idba Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 22,2024

1. Install "idba" package

This is a short guide on how to install idba on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                idba
            
                    
    
    Copied

2. Uninstall "idba" package

This guide let you learn how to uninstall idba on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                idba
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the idba package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: idba
Priority: optional
Section: universe/science
Installed-Size: 921
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 1.1.2-1
Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.4), libstdc++6 (>= 4.4.0), python
Filename: pool/universe/i/idba/idba_1.1.2-1_amd64.deb
Size: 278734
MD5sum: fae6be4a200d68f463ff2dc51ac1d218
SHA1: 6f7496ba9ef065c72056a9f12836c0bcc12a83b5
SHA256: cbf129538b098f0409c3446f8f94c1834c3e94885161784e831ccb6678bb5201
Description-en: iterative De Bruijn Graph De Novo short read assembler for transcriptome
IDBA-Tran is an iterative De Bruijn Graph De Novo short read assembler
for transcriptome. It is purely de novo assembler based on only RNA
sequencing reads. IDBA-Tran uses local assembly to reconstructing
missing k-mers in low-expressed transcripts and then employs progressive
cutoff on contigs to separate the graph into components. Each component
corresponds to one gene in most cases and contains not many transcripts.
A heuristic algorithm based on pair-end reads is then used to find the
isoforms.
Description-md5: 12103ea77227512c768ebc68829e730a
Homepage: http://i.cs.hku.hk/~alse/hkubrg/projects/idba_tran/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu