How to Install and Uninstall chimeraslayer Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "chimeraslayer" package

Please follow the steps below to install chimeraslayer on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                chimeraslayer
            
                    
    
    Copied

2. Uninstall "chimeraslayer" package

Learn how to uninstall chimeraslayer on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                chimeraslayer
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the chimeraslayer package on Ubuntu 21.10 (Impish Indri)

Package: chimeraslayer
Architecture: all
Version: 20101212+dfsg1-4
Priority: optional
Section: universe/science
Source: microbiomeutil
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 155
Depends: microbiomeutil-data, cdbfasta, ncbi-blast+-legacy
Recommends: nast-ier
Filename: pool/universe/m/microbiomeutil/chimeraslayer_20101212+dfsg1-4_all.deb
Size: 32104
MD5sum: 8ccf8ce7dc36634a7a5102ff58c7678f
SHA1: 305b66c37ba17fa9fc2ce196a03b1a460221ff49
SHA256: feb3cb6266cf8f9f24b570a8f82402c0f20a4438aa537a4c876dfa6f7d404127
SHA512: 4d8e7c6112747ac39b2f34d9a6d0ce1f61333eaa98d90ec0978d391f33606a58f11f3fafcc760068c9a01b95e22ee8cf5b85cb8841962f8413f9158a97a14f6a
Homepage: http://microbiomeutil.sourceforge.net/
Description-en: detects likely chimeras in PCR amplified DNA
ChimeraSlayer is a chimeric sequence detection utility, compatible with
near-full length Sanger sequences and shorter 454-FLX sequences (~500bp).
.
Chimera Slayer involves the following series of steps that operate to
flag chimeric 16S rRNA sequences:
.
1. the ends of a query sequence are searched against an included
database of reference chimera-free 16S sequences to identify potential
parents of a chimera
2. candidate parents of a chimera are selected as those that form a
branched best scoring alignment to the NAST-formatted query sequence
3. the NAST alignment of the query sequence is improved in a
‘chimera-aware’ profile-based NAST realignment to the selected
reference parent sequences
4. an evolutionary framework is used to flag query sequences found to
exhibit greater sequence homology to an in silico chimera formed
between any two of the selected reference parent sequences.
.
To run Chimera Slayer, you need NAST-formatted sequences generated by
the nast-ier utility.
.
ChimeraSlayer is part of the microbiomeutil suite.
Description-md5: bf434653c4fd71a825161211bb8cbd8e