How to Install and Uninstall chimeraslayer Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 07,2024

1. Install "chimeraslayer" package

This guide covers the steps necessary to install chimeraslayer on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                chimeraslayer
            
                    
    
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2. Uninstall "chimeraslayer" package

Please follow the step by step instructions below to uninstall chimeraslayer on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                chimeraslayer
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the chimeraslayer package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: chimeraslayer
Priority: optional
Section: universe/science
Installed-Size: 155
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Source: microbiomeutil
Version: 20101212+dfsg1-1
Depends: microbiomeutil-data, cdbfasta, blast2
Recommends: nast-ier
Filename: pool/universe/m/microbiomeutil/chimeraslayer_20101212+dfsg1-1_all.deb
Size: 32098
MD5sum: c9376eceead3394b40604b1529899645
SHA1: 92c254384eb767b1902c0ba0afd16c28aa79d894
SHA256: af17b19862656e0925dc63ca5e0bc4c17de22557feea3f7b8e59f4fc6fe80f0c
Description-en: detects likely chimeras in PCR amplified DNA
ChimeraSlayer is a chimeric sequence detection utility, compatible with
near-full length Sanger sequences and shorter 454-FLX sequences (~500bp).
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Chimera Slayer involves the following series of steps that operate to
flag chimeric 16S rRNA sequences:
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1. the ends of a query sequence are searched against an included
database of reference chimera-free 16S sequences to identify potential
parents of a chimera
2. candidate parents of a chimera are selected as those that form a
branched best scoring alignment to the NAST-formatted query sequence
3. the NAST alignment of the query sequence is improved in a
‘chimera-aware’ profile-based NAST realignment to the selected
reference parent sequences
4. an evolutionary framework is used to flag query sequences found to
exhibit greater sequence homology to an in silico chimera formed
between any two of the selected reference parent sequences.
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To run Chimera Slayer, you need NAST-formatted sequences generated by
the nast-ier utility.
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ChimeraSlayer is part of the microbiomeutil suite.
Description-md5: bf434653c4fd71a825161211bb8cbd8e
Homepage: http://microbiomeutil.sourceforge.net/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu