How to Install and Uninstall dazzdb Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 13,2024

1. Install "dazzdb" package

Please follow the guidance below to install dazzdb on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                dazzdb
            
                    
    
    Copied

2. Uninstall "dazzdb" package

Learn how to uninstall dazzdb on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                dazzdb
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the dazzdb package on Ubuntu 21.10 (Impish Indri)

Package: dazzdb
Architecture: amd64
Version: 1.0+git20201103.8d98c37-1.1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 573
Depends: libc6 (>= 2.34)
Filename: pool/universe/d/dazzdb/dazzdb_1.0+git20201103.8d98c37-1.1_amd64.deb
Size: 128760
MD5sum: c5682dbc21bc6debdb9e1823505a3bfe
SHA1: b636339e1a6f32b8e0fd07a288d2db68f07e8850
SHA256: 86301ad034ba325aa394fc4d49be029a014dd77f79256495d8266444f4f39ba5
SHA512: 453885e2a1454eedbf51826e475a7046127d7745b1bbf14cabc092d4a0352860839c38a8467a883dc35c87766a9b66c85a9594b7efe37f994c366228fbc51a34
Homepage: https://github.com/thegenemyers/DAZZ_DB
Description-en: manage nucleotide sequencing read data
To facilitate the multiple phases of the dazzler assembler, all the read data
is organized into what is effectively a database of the
reads and their meta-information. The design goals for this data base
are as follows:
* The database stores the source Pacbio read information in such a
way that it can re-create the original input data, thus permitting
a user to remove the (effectively redundant) source files. This
avoids duplicating the same data, once in the source file and once
in the database.
* The data base can be built up incrementally, that is new sequence
data can be added to the data base over time.
* The data base flexibly allows one to store any meta-data desired for
reads. This is accomplished with the concept of *tracks* that
implementors can add as they need them.
* The data is held in a compressed form equivalent to the .dexta and
.dexqv files of the data extraction module. Both the .fasta and
.quiva information for each read is held in the data base and can be
recreated from it. The .quiva information can be added separately and
later on if desired.
* To facilitate job parallel, cluster operation of the phases of the
assembler, the database has a concept of a *current partitioning* in
which all the reads that are over a given length and optionally
unique to a well, are divided up into *blocks* containing roughly a
given number of bases, except possibly the last block which may have
a short count. Often programs can be run on blocks or pairs of blocks
and each such job is reasonably well balanced as the blocks are all
the same size. One must be careful about changing the partition
during an assembly as doing so can void the structural validity of
any interim block-based results.
Description-md5: 7e00727db0845d5aaf47b78dbb71d5bc