How to Install and Uninstall dazzdb Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 07,2024

1. Install "dazzdb" package

This is a short guide on how to install dazzdb on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                dazzdb
            
                    
    
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2. Uninstall "dazzdb" package

Please follow the steps below to uninstall dazzdb on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                dazzdb
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the dazzdb package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: dazzdb
Priority: optional
Section: universe/science
Installed-Size: 765
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 1.0-1
Depends: libc6 (>= 2.7)
Filename: pool/universe/d/dazzdb/dazzdb_1.0-1_amd64.deb
Size: 110494
MD5sum: e0e3e311579e263e698729eed710ecda
SHA1: 251cc22f91f8e68d48d0f1a800cc07f55098e551
SHA256: a0ac508adc97ad84874db854ef032ab684637f354df2486ac8860505160ee076
Description-en: manage nucleotide sequencing read data
To facilitate the multiple phases of the dazzler assembler, all the read data
is organized into what is effectively a database of the
reads and their meta-information. The design goals for this data base
are as follows:
* The database stores the source Pacbio read information in such a
way that it can re-create the original input data, thus permitting
a user to remove the (effectively redundant) source files. This
avoids duplicating the same data, once in the source file and once
in the database.
* The data base can be built up incrementally, that is new sequence
data can be added to the data base over time.
* The data base flexibly allows one to store any meta-data desired for
reads. This is accomplished with the concept of *tracks* that
implementors can add as they need them.
* The data is held in a compressed form equivalent to the .dexta and
.dexqv files of the data extraction module. Both the .fasta and
.quiva information for each read is held in the data base and can be
recreated from it. The .quiva information can be added separately and
later on if desired.
* To facilitate job parallel, cluster operation of the phases of the
assembler, the database has a concept of a *current partitioning* in
which all the reads that are over a given length and optionally
unique to a well, are divided up into *blocks* containing roughly a
given number of bases, except possibly the last block which may have
a short count. Often programs can be run on blocks or pairs of blocks
and each such job is reasonably well balanced as the blocks are all
the same size. One must be careful about changing the partition
during an assembly as doing so can void the structural validity of
any interim block-based results.
Description-md5: 7e00727db0845d5aaf47b78dbb71d5bc
Homepage: https://github.com/thegenemyers/DAZZ_DB
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu