Complete Guide: Installing hts-nim-tools on Ubuntu 21.10 (Impish Indri) 2024

1. Install "hts-nim-tools" package

This guide let you learn how to install hts-nim-tools on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                hts-nim-tools
            
                    
    
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2. Uninstall "hts-nim-tools" package

Please follow the guidelines below to uninstall hts-nim-tools on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                hts-nim-tools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the hts-nim-tools package on Ubuntu 21.10 (Impish Indri)

Package: hts-nim-tools
Architecture: amd64
Version: 0.2.1-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 888
Depends: libc6 (>= 2.29), nim-hts-dev
Filename: pool/universe/h/hts-nim-tools/hts-nim-tools_0.2.1-1_amd64.deb
Size: 207348
MD5sum: b4faea2f59792d31203c409690fb5f2c
SHA1: 66dc3102971928fda9eb154a99aa0f6ff23ad25e
SHA256: 3a47e0d49c9140b4ee85ebe55151e89e4a484fc0dbce2695f40a23042329df09
SHA512: bf8581987193ff5f26c980250bfa9879468aaf27a53830789deb38b8c4ab4db27d83691c47484f6d355caf91b4351e1a6dee938fb23962566e81d91a37fedccd
Homepage: https://github.com/brentp/hts-nim-tools
Description-en: tools biological sequences: bam-filter, count-reads, vcf-check
This package provides several tools that (at least at the time of their
creation) provide functionalities beyond the routine provided by samtools
and other reverse dependencies of the htslib.
.
These new tools are
• bam-filter : filter BAM/CRAM/SAM files with a simple expression language
• count-reads: count BAM/CRAM reads in regions given in a BED file
• vcf-check : check regions of a VCF against a background for missing chunks
.
and yes, as the name suggests, these tools are all implemented in nim,
using the nim-hts (upstream: hts-nim) wrapper for the htslib.
Description-md5: d331f37ae66d0d814101b29e1ed9f759