How to Install and Uninstall hts-nim-tools Package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Last updated: May 10,2024

Deprecated! Installation of this package may no longer be supported.

You can also install and uninstall the hts-nim-tools on the following distributions in the same way, as they are all based on the Ubuntu system

Kubuntu 22.04 LTS
Lubuntu 22.04 LTS
Xubuntu 22.04 LTS
Ubuntu MATE 22.04 LTS
Ubuntu Studio 22.04 LTS
Pop!_OS 22.04 LTS
Zorin OS 16 / Zorin OS 17
Ubuntu Budgie 22.04

1. Install "hts-nim-tools" package

Please follow the guidance below to install hts-nim-tools on Ubuntu 22.04 LTS (Jammy Jellyfish)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                hts-nim-tools
            
                    
    
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2. Uninstall "hts-nim-tools" package

Please follow the guidelines below to uninstall hts-nim-tools on Ubuntu 22.04 LTS (Jammy Jellyfish):


    
        
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                sudo apt remove
            
                        
                hts-nim-tools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the hts-nim-tools package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Package: hts-nim-tools
Architecture: amd64
Version: 0.2.1-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 888
Depends: libc6 (>= 2.29), nim-hts-dev
Filename: pool/universe/h/hts-nim-tools/hts-nim-tools_0.2.1-1_amd64.deb
Size: 207348
MD5sum: b4faea2f59792d31203c409690fb5f2c
SHA1: 66dc3102971928fda9eb154a99aa0f6ff23ad25e
SHA256: 3a47e0d49c9140b4ee85ebe55151e89e4a484fc0dbce2695f40a23042329df09
SHA512: bf8581987193ff5f26c980250bfa9879468aaf27a53830789deb38b8c4ab4db27d83691c47484f6d355caf91b4351e1a6dee938fb23962566e81d91a37fedccd
Homepage: https://github.com/brentp/hts-nim-tools
Description-en: tools biological sequences: bam-filter, count-reads, vcf-check
This package provides several tools that (at least at the time of their
creation) provide functionalities beyond the routine provided by samtools
and other reverse dependencies of the htslib.
.
These new tools are
• bam-filter : filter BAM/CRAM/SAM files with a simple expression language
• count-reads: count BAM/CRAM reads in regions given in a BED file
• vcf-check : check regions of a VCF against a background for missing chunks
.
and yes, as the name suggests, these tools are all implemented in nim,
using the nim-hts (upstream: hts-nim) wrapper for the htslib.
Description-md5: d331f37ae66d0d814101b29e1ed9f759