How to Install and Uninstall kallisto-examples Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 28,2024

1. Install "kallisto-examples" package

Please follow the step by step instructions below to install kallisto-examples on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                kallisto-examples
            
                    
    
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2. Uninstall "kallisto-examples" package

Learn how to uninstall kallisto-examples on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                kallisto-examples
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kallisto-examples package on Ubuntu 21.10 (Impish Indri)

Package: kallisto-examples
Architecture: all
Version: 0.46.2+dfsg-3
Multi-Arch: foreign
Priority: optional
Section: universe/science
Source: kallisto
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 871
Recommends: kallisto
Suggests: snakemake
Filename: pool/universe/k/kallisto/kallisto-examples_0.46.2+dfsg-3_all.deb
Size: 667108
MD5sum: 73a46484353f39e6526d975a08d6fce0
SHA1: 7a82376b26f646b5ce7749486cc3b339cf060ec9
SHA256: 9ad5141dc6c91166cdf64c4e575f17529669b48d71b68e047650994e79d595b9
SHA512: b9a3545a7a36d4d7ca0a7a9d224424566d5b06d3b4395a64249d1b4880bf1ae8c1d3a7456a587080d6a0b66fb7676ae3b22a8dfed41b4fc9f31e21fa8191f46f
Homepage: https://pachterlab.github.io/kallisto
Description-en: near-optimal RNA-Seq quantification (example data)
Kallisto is a program for quantifying abundances of transcripts from
RNA-Seq data, or more generally of target sequences using high-throughput
sequencing reads. It is based on the novel idea of pseudoalignment for
rapidly determining the compatibility of reads with targets, without the
need for alignment. On benchmarks with standard RNA-Seq data, kallisto
can quantify 30 million human reads in less than 3 minutes on a Mac
desktop computer using only the read sequences and a transcriptome index
that itself takes less than 10 minutes to build. Pseudoalignment of
reads preserves the key information needed for quantification, and
kallisto is therefore not only fast, but also as accurate than existing
quantification tools. In fact, because the pseudoalignment procedure is
robust to errors in the reads, in many benchmarks kallisto significantly
outperforms existing tools.
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This package contains usage examples which are used in autopkgtest.
Description-md5: 26f735b25852358e202670077e2510b5