How to Install and Uninstall last-align Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 23,2024

1. Install "last-align" package

Here is a brief guide to show you how to install last-align on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                last-align
            
                    
    
    Copied

2. Uninstall "last-align" package

Please follow the guidelines below to uninstall last-align on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                last-align
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the last-align package on Ubuntu 21.10 (Impish Indri)

Package: last-align
Architecture: amd64
Version: 1179-1
Built-Using: simde (= 0.7.2-3)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 21545
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4)
Recommends: python3, python3-pil, parallel
Filename: pool/universe/l/last-align/last-align_1179-1_amd64.deb
Size: 1892260
MD5sum: 74fcbdccc4dd347f97277098087e6916
SHA1: 8446e53b83b1a48b5e2f74fbde45385a6eb157ea
SHA256: 3aef4b1e88a817001bad5ed4eeff21cbee46d2e4e4d71bfd7e46a168f6b5a1bb
SHA512: 5d83c4df24bcf002cd73fdbb77ada8e59a495e65fbcb46f6ffe8abd7a82cc331f0b9ab0784bca4f400abaac3f2866bf9863a4f681815fce730cf9b70079168ac
Homepage: http://last.cbrc.jp/
Description-en: genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
This allows one to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
Description-md5: 34c07e83cd3ffe3ca9aa9b81ea1ff067