How to Install and Uninstall libseqlib2 Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 27,2024

1. Install "libseqlib2" package

Please follow the step by step instructions below to install libseqlib2 on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                libseqlib2
            
                    
    
    Copied

2. Uninstall "libseqlib2" package

Please follow the step by step instructions below to uninstall libseqlib2 on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                libseqlib2
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the libseqlib2 package on Ubuntu 21.10 (Impish Indri)

Package: libseqlib2
Architecture: amd64
Version: 1.2.0+dfsg-4
Multi-Arch: same
Priority: optional
Section: universe/libs
Source: libseqlib
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 557
Depends: libc6 (>= 2.14), libfml0 (>= 0.1+git20190320.b499514), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libjsoncpp24 (>= 1.9.4), libssw0 (>= 1.1), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4)
Filename: pool/universe/libs/libseqlib/libseqlib2_1.2.0+dfsg-4_amd64.deb
Size: 160732
MD5sum: f55bf0e2ca78a4d38fffcf3dc459d002
SHA1: 5007ceaa5d03ec706ecb655ce004af0491704b49
SHA256: 7701e40aaeaeb955db99e1d55caf42dc249cdbc96876d0461a961d0171f9f965
SHA512: 0abce5c1eed803326bd98fb70699bce0fdec7f57a272899ab0323c415acb6a5fea1bca90ab917baf4befda03f0895d086a7aae0841cf30c94b37537e02a8b71c
Homepage: https://github.com/walaj/SeqLib
Description-en: C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
Description-md5: 346127beb1a0da07603dfaeecb9a64e2