How to Install and Uninstall mira-assembler Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "mira-assembler" package

This is a short guide on how to install mira-assembler on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                mira-assembler
            
                    
    
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2. Uninstall "mira-assembler" package

Please follow the guidelines below to uninstall mira-assembler on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                mira-assembler
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mira-assembler package on Ubuntu 21.10 (Impish Indri)

Package: mira-assembler
Architecture: amd64
Version: 4.9.6-5build1
Priority: optional
Section: universe/science
Source: mira
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 7634
Depends: libboost-filesystem1.74.0 (>= 1.74.0), libboost-regex1.74.0-icu67, libboost-thread1.74.0 (>= 1.74.0), libc6 (>= 2.29), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6)
Recommends: mira-rfam-12s-rrna
Suggests: mira-doc
Filename: pool/universe/m/mira/mira-assembler_4.9.6-5build1_amd64.deb
Size: 2449688
MD5sum: df5e97dbf9b7e866d44490c1e9f18103
SHA1: 2bf739d4e83001d51b4ec4e6eb7da10ac3655338
SHA256: 2a636e0ff408e3ebade8ade591fa40a01ae3f96adddd404c65b5cfbfb1d4478e
SHA512: f2448ba3aaddf8dba34905a1edb87d40233e3d552d669592601c8b1d3326d5fde4ce4cd74257782604a3eb122d91c4015613df46e90cb8510a6aef0c4626b919
Homepage: https://sourceforge.net/p/mira-assembler/wiki/Home/
Description-en: Whole Genome Shotgun and EST Sequence Assembler
The mira genome fragment assembler is a specialised assembler for
sequencing projects classified as 'hard' due to high number of similar
repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
specialised on reconstructing pristine mRNA transcripts while
detecting and classifying single nucleotide polymorphisms (SNP)
occurring in different variations thereof.
.
The assembler is routinely used for such various tasks as mutation
detection in different cell types, similarity analysis of transcripts
between organisms, and pristine assembly of sequences from various
sources for oligo design in clinical microarray experiments.
.
The package provides the following executables:
Binaries provided:
* mira: for assembly of genome sequences
* miramem: estimating memory needed to assemble projects.
* mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
* miraconvert: is a tool to convert, extract and sometimes recalculate all
kinds of data related to sequence assembly files.
Description-md5: a8c6d1905e05378eb5c622bc2c3fc577